Vitis riparia (riverbank grape): 117916524
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Entry
117916524 CDS
T07274
Name
(RefSeq) protein GAMETOPHYTE DEFECTIVE 1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117916524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117916524
03016 Transfer RNA biogenesis [BR:
vri03016
]
117916524
03029 Mitochondrial biogenesis [BR:
vri03029
]
117916524
Enzymes [BR:
vri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
117916524
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
117916524
Transfer RNA biogenesis [BR:
vri03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
117916524
Mitochondrial biogenesis [BR:
vri03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
117916524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_P_p30
Motif
Other DBs
NCBI-GeneID:
117916524
NCBI-ProteinID:
XP_034688494
LinkDB
All DBs
Position
6:18197109..18201360
Genome browser
AA seq
665 aa
AA seq
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MGFFDLNIPYDGTTAAGDKSSRIKVVVKAMELGYSGVAYNRKIKGVMSDSDSCSIPPLSL
SSLLKLAPSLSSSVRFHRSLLGVPLSSPFRQYTRLTVAVDSSPQASALNSGNPVLKSYDL
VAVRPLNQNAFDQACQVSEVDLIAIDFSEKLPFRLKLPMVKAAIKRGVYFEITYSNLISD
VQSRKQVISNAKLLVDWTRGNNLIFSSAAPSVNELRGPYDVANLSSLLGLSMERAKAAIS
KNCRSLIANALRKKQFYKEAIRVELIPSSEFDSNEPWSGNGLKWDPISSGEGDLLLDDMA
KSFSAAGKVSKTVKAIDFASIVDNMSSHGLQLKDLLSGTKSVLQPVDNVKNSMSVDGKIG
APVPTNGGSEQPDMLKLFPETERTSSYNTPSKCQISGHEDSKKSFSPNDTSKADIDSEEI
KTHTTITEEEPNISNGLVDFSPIRTEIDNLQSEECTAGSEANVVLPDDNLTLCTALMDIE
CDAVCNADADGKFEVPIQTRDVNLSVLQNEESRNAKGFDVVLGAQSVTVDEVLVDTNMKN
EASLSLASNNVLLHENSSEIEFREPVDDSVLLSDGTPPVECYDELKGSNDSSVANHELLD
EMIVEAQKQADDSETEYPTINESISGKAKAKQRTPRRAALLFPFKRLVSPVLFKKKAHRK
RNKTT
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgggattcttcgaccttaacatcccctacgatgggacaacggcggccggcgacaagagc
agtcggataaaggtggtggtgaaggccatggagctagggtacagcggagttgcctacaac
cgcaagatcaagggcgtgatgtcggactcagactcctgctcaatacccccactctctctc
tcctctctcctcaaactggccccatctctctcctcctccgttcgcttccaccgcagcctt
ctcggcgttcccctctcctctcccttccgtcagtacacgcgcctcactgtcgccgttgac
tcctcccctcaggcctccgctctcaactctggtaaccccgttctcaagtcctacgatttg
gtcgctgttcggcctttgaaccagaacgccttcgatcaggcctgtcaggtttctgaggta
gatttaattgcgattgatttctcggagaagctgccgttccgattgaagcttcccatggtt
aaagctgcaattaagcgcggggtgtattttgaaatcacatactctaatcttatatccgat
gttcaatccaggaaacaagtgatatcgaatgccaagttgttggtggattggactcgagga
aacaatctcatcttctcaagtgctgccccttctgtaaatgagcttagagggccatatgat
gttgcaaatttatcttctttgcttggtctctccatggaacgtgctaaagcagctatttct
aaaaattgtagatctcttatagctaatgctttaaggaaaaagcaattttacaaggaggcc
atcagagttgaattaataccatccagtgaatttgactccaatgaaccttggtctggcaat
ggacttaaatgggaccccatctctagtggtgaaggtgatctgctcttagatgatatggca
aaatctttctctgctgctggtaaagtatccaagactgtgaaagccattgattttgcttca
attgtggacaacatgtcatcgcatgggttgcaactaaaggatttgttatcaggaacaaag
tctgtgttgcagccagtggataatgttaaaaactctatgtctgttgatgggaaaattggg
gcaccagttccaactaatggaggatcagaacaaccagacatgcttaaactttttcctgaa
acagaacggacatcatcatataataccccatcaaaatgtcaaatatctggtcatgaagat
tctaaaaaatcattttcgccgaatgatacttcaaaagctgatattgattctgaagaaatt
aaaacacatactaccatcactgaggaagaacctaatatttcaaatggccttgtagatttt
tccccaattagaacagaaatagataatttgcaatcagaagagtgcacagctggttctgaa
gcaaatgttgtgttaccagatgataatttaacattgtgcactgcgttaatggacattgag
tgtgatgctgtgtgtaatgctgatgctgatggtaaatttgaagtccccattcaaaccagg
gatgtgaatctttctgttttacagaatgaagaatctaggaatgcaaaaggttttgatgtg
gttttgggggcacaaagtgtcacagtggatgaagttttagttgacactaatatgaaaaat
gaagcaagtttatctttggcctcaaacaatgtgcttttgcatgaaaattcctcagaaata
gaatttagggaacctgtagatgattcagttttactttctgatggaactccccctgtggag
tgctatgatgagctgaaaggcagcaatgattcttcagttgcaaatcatgagctactggac
gaaatgatcgtggaagcgcaaaaacaagctgatgattctgaaactgagtatcctaccatc
aatgaatctatatcaggtaaagccaaagcaaaacagaggacacctcgtagggctgcactt
ctatttcctttcaagcgcttggtgagtccagttcttttcaagaagaaagctcaccgaaaa
agaaacaagactacataa
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