Vitis riparia (riverbank grape): 117916534
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Entry
117916534 CDS
T07274
Name
(RefSeq) clathrin heavy chain 2
KO
K04646
clathrin heavy chain
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04142
Lysosome
vri04144
Endocytosis
vri05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117916534
04142 Lysosome
117916534
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
117916534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
vri04131
]
117916534
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vri04147
]
117916534
Membrane trafficking [BR:
vri04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
117916534
Exosome [BR:
vri04147
]
Exosomal proteins
Proteins found in most exosomes
117916534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
Totivirus_coat
Motif
Other DBs
NCBI-GeneID:
117916534
NCBI-ProteinID:
XP_034688507
LinkDB
All DBs
Position
6:complement(15365576..15380876)
Genome browser
AA seq
1705 aa
AA seq
DB search
MAAANAPISMKEALTLSSIGISPQFMTFTHVTMESDKYICVRETAPQNSVVIIDMSMPMQ
PLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIEMKAKMKSYQMPEQVVFWKWI
TPKMLGLVTQTSVFHWSIEGDSEPVKMFERTANLVNNQIINYRCDPSEKWLVLIGIAPGS
PERPQLVKGNMQLFSVDQQRSQALEAHAASFASFKVLGNENPSTLICFASKTTNAGQITS
KLHVIELGAQPGKPGFTKKQADLFFPPDFADDFPVSMQVSQKYGLIYVITKLGLLFVYDL
ETATAVYRNRISPDPIFLTAEASSIGGFYAINRRGQVLLATVNEATIVPFVSGQLNNLEL
AVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGLLRTPDTVAKFQSVPVQ
AGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLV
KTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQ
GAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLE
INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAI
EPQALVEFFGTLSREWALECMKDLLLVNLRANLQIIVQTAKEYSEQLGVEACIKLFEQFK
SYEGLYFFLGSYLSSSEDPAIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMET
KLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPE
DFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS
NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARY
VVERMDADLWEKVLSPDNEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIE
LLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGDVAVEAQLYE
EAFAIFKKFNLNVQAVNVLLDNIQSIERAVEFAFRVEEDAVWSQVAKAQLKEGLVSDAIE
SFIRADDATQFLDVIRAAENANVYHDLVRYLLMVRQKTKEPKVDSELIYAYAKIDRLGDI
EEFILMPNVANLQNVGDRLYDEALYEAAKIIFAFISNWAKLACTLVKLRQFQGAVDAARK
ANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSDYYQNRGCFNELISLMESG
LGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYI
QYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVL
ALRVDHTRVVDIMRKAGHLHLVKPYMVAVQSTNVAAVNEALNGIYVEEEDYDRLRESIDM
HDNFDQIGLAQKVEKHELLEMRRIAAYIYKKAGRWKQSIALSKKDNLYKDAMETCSQSGD
RELAEELLVYFIEQKKKECFASCLFVCYDLIRPDVVLELAWMNNMIDFAFPYLLQFIREY
TGKVDDLVKDRIEALKETKAKEEEEKDVVKQQNMYAQLLPLALPAPPMPGMGGAGMGGGF
AAPPPMGGMGMPPMPPFGMPPMGSY
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcaaatgctccaatcagcatgaaggaggccttgacgttgtctagtatcgga
attagtccgcaattcatgacatttacgcatgtgaccatggagtcggataagtatatttgt
gttagggagacggcgccgcagaacagtgttgttatcatcgacatgagtatgcctatgcag
cctttgcggaggcctatcactgcagattcggctttgatgaaccccaattccagaattctt
gctctcaaagctcaactccctggaactactcaggatcatttacaaatattcaacattgaa
atgaaagcaaagatgaaatcatatcagatgcctgagcaggttgtcttttggaagtggatt
acccctaagatgctgggcctggttacacaaacatcagtatttcattggtccattgaaggt
gattctgagcctgtgaagatgtttgagcgaactgcaaatctggtaaataatcaaataatc
aactatcgttgcgatccttctgaaaagtggttggttttgattgggattgcacctggttca
cctgagaggccacaactcgtcaaagggaatatgcagcttttctcagtggatcagcaacgt
agtcaggcccttgaagcacatgctgcatcatttgcctcgtttaaagtattggggaatgag
aatccctcaacgctaatatgttttgcctcaaagaccaccaatgctggacaaattacatca
aagctacatgttattgaacttggggcccagccaggcaaacctggattcactaagaaacaa
gcagatctgttctttcctccggattttgcagatgactttcctgtgtcaatgcaggtatcc
caaaagtatggtttgatatatgtgataacaaagcttggacttctattcgtgtatgaccta
gagacggctactgcagtttacagaaaccgaattagtccagacccgatatttttgacagca
gaagcttcctcaattggaggtttttatgccattaataggcgagggcaggttttgcttgct
actgtaaatgaagcaacaattgtgccttttgttagtggccagttgaataacttggagctt
gccgttaatcttgccaaaagaggaaaccttcctggtgcagaaaacctggttgtccagcgg
ttccaagaactgtttgctcagacaaagtataaggaagctgcggagcttgctgcagaatct
ccacagggactcctgcgtactcctgatactgttgctaaatttcagagtgtccctgtgcaa
gctggacagacaccacctctgttgcagtactttggtactctgttaaccagaggaaaactc
aatgctttcgaatcactggaattgtcacgccttgttgtaaatcagaataaaaagaatctc
ttagagaattggttggcagaggacaagcttgaatgcagtgaggagcttggagatcttgtt
aagacggtggataatgaccttgcactgaaaatatatatcaaagctagggccactccaaaa
gttgttgcagcatttgctgagaggagggagttcgataaaattctaatatactccaagcag
gttggatatacgcctgattatttgttcctactccaaacaattttgcggtcagatccccag
ggggcagttaattttgctttaatgatgtctcaaatggaaggaggttgcccggttgattac
aatacaataacagatctattccttcagaggaatctgattcgtgaagcaacagcctttttg
ttggacgtactgaagccaaatttacctgagcatgggttccttcaaactaaggttttggaa
atcaatctggttacatttccaaatgtcgcagatgctatattagctaatggtatgtttagt
cactatgatcgcccacgtattgcacagctctgtgaaaaagctggtctttatgtgcgagcc
cttcagcattatactgaattgcctgatatcaaacgtgtcattgtgaacacacatgccatt
gagccacaggctcttgttgagttctttggaactctttcaagagaatgggctcttgagtgt
atgaaagaccttctacttgtcaatcttcgtgccaatcttcagataattgtgcagactgcc
aaggagtattctgaacagttgggtgttgaggcatgtataaaactgtttgagcagttcaag
tcttatgaaggattatactttttcttggggtcatatttgagctccagtgaggaccctgct
atccacttcaaatacattgaggcagctgctaaaactggacaaattaaggaggtcgaacgt
gtgactcgggaatcaaacttttatgatgccgagaagacaaagaattttctgatggaaacc
aagcttcctgatgcacgcccactgattaatgtctgtgatcgttttggttttgttccagat
ctcacccattacttatatactaataatatgctccggtatattgaaggttatgttcaaaag
gtaaatccgggaaatgctcctctagttgttgggcaacttctagatgatgaatgccctgaa
gatttcattaaaggtctcattctttcagttcggtctcttcttcctgttgagcccctcgtg
gaggaatgtgagaaaagaaatcgtctccgtttactcactcagttcttggagcatcttgtg
agtgagggtagccaggatgtgcatgttcataatgctctgggtaaaatcatcatagacagc
aacaacaatccagaacattttctcactactaacccatattatgattcacgtgttgtggga
aaatattgtgagaaaagggatcccactcttgcagttgttgcttaccgcagaggacagtgt
gatgatgaacttatcaatgttacaaataaaaactctttgttcaaactgcaggccagatat
gtggtggaaaggatggatgctgacctctgggagaaagttcttagtcccgataacgagtat
agaaggcaactaattgatcaagttgtatctactgctttgcctgaaagcaagagtccagag
caagtttcagcagctgttaaagcttttatgactgctgatcttccgcatgagcttattgag
cttcttgagaagattgtgcttcagaattctgcatttagtggaaactttaatcttcaaaat
ctgcttatccttacagctatcaaggctgatccatcacgagttatggattatattaataga
ctagacaactttgatggacctgctgttggggatgtggctgttgaagcacaattgtatgag
gaagcatttgccattttcaaaaagttcaacttgaatgttcaggctgtgaatgttctattg
gataacattcagagcattgaacgagctgtagagtttgcattccgtgttgaagaagatgct
gtctggagccaggtagctaaggcccagctaaaagaggggctagtgagtgatgcaattgaa
tcctttattcgtgcggacgatgccacccaattcttagatgtcatacgggctgctgagaat
gcaaatgtataccatgacttggtgaggtatctcctgatggttaggcagaaaaccaaagag
cccaaggtcgacagtgaactcatttatgcatatgctaagattgataggctgggtgacatt
gaggagttcattcttatgcctaatgttgctaatctccaaaatgttggtgatcgcttgtat
gatgaagccttatatgaggcagcaaagatcatatttgcatttatttctaactgggctaaa
ctggcttgtacgcttgtgaagctaagacaattccaaggtgcagttgatgcagctcggaaa
gccaacagctcaaaaacatggaaggaagtttgctttgcctgtgttgatgctgaggaattt
cgcttggctcagatatgtgggctcaacatcatcatacaggtggatgatttggaagaagtc
agtgactattaccagaacaggggatgctttaatgagctcatatctctcatggagagtgga
ttgggattggaacgtgcacatatgggcatctttactgagttgggtgtcctttatgccaga
tatcgtcctgagaagcttatggagcacattaaactattctcaacccgcctaaacattccc
aaactcatacgagcgtgtgatgagcagcagcactggaaggagcttacttatctgtatatt
caatatgatgagtttgacaatgctgcaaccaccataatgaaccactccccagaagcatgg
gatcacatgcaattcaaagatgttgcagtcaaagttgcaaatgtggagctctactacaag
gccgtgcacttctacctgcaggaacatcctgatcttattaatgatctccttaatgtgctt
gctcttcgtgtggaccacactcgggttgttgacataatgcgaaaggctggtcaccttcat
cttgtgaagccctatatggttgctgttcagagtactaatgtggctgcggtaaatgaagca
ttaaatggtatttatgtagaggaggaggactatgatagacttcgggaatcaatagatatg
catgataactttgaccagataggccttgcacagaaggttgagaaacatgagcttctggag
atgaggcgtattgctgcttatatttataagaaagcaggtagatggaaacaatccattgca
ttgtcaaagaaagataacctatacaaagatgcgatggagacatgctctcagtctggggat
cgtgaacttgcagaggagttgcttgtttatttcattgagcagaaaaagaaagagtgtttt
gcatcatgcctctttgtctgttacgatttaattcggccagacgttgtccttgagcttgca
tggatgaacaatatgatcgactttgccttcccatatctcttacagtttattcgtgagtac
acgggcaaagtagatgaccttgtcaaggacagaattgaggctcttaaagagacaaaagct
aaagaggaggaggagaaggatgttgtgaaacaacagaatatgtatgcacagttactgcct
cttgctttgcccgctccaccaatgccaggaatgggtggtgcagggatgggcggtggtttt
gctgctccaccaccaatgggcgggatgggaatgcctccaatgccacctttcggcatgcca
ccaatgggctcctattga
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integrated database retrieval system