Vitis riparia (riverbank grape): 117916541
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Entry
117916541 CDS
T07274
Name
(RefSeq) putative tRNA pseudouridine synthase isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vri03016
]
117916541
Enzymes [BR:
vri01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
117916541
Transfer RNA biogenesis [BR:
vri03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
117916541
Prokaryotic type
117916541
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
117916541
NCBI-ProteinID:
XP_034688516
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All DBs
Position
6:14257283..14263430
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AA seq
531 aa
AA seq
DB search
MVVSSLRFPLFPWIISNHTSNLRFSNPRILPQWSPHCSSSSSSTVTESNPDQSVQKWESF
RKKKVVMRVGYVGTNYRGLQMQRDESSLSTIEGELETAVFKAGGIRDSNYGNLHKIGWDR
SSRTDKGVHSLATMISLKMEIPANAWKEDPNGIALANYVNFHLPNNIKVFSILPSQRSFD
ARRECDLRKYSYLLPAEIIGIKSNSSASEIDHHIAEFNDILNTFENLWPLIKAFRKGEHP
FQNYTIRSKYRKQFPAKQSPGNGGVFRRAKSSGEASTSEFEVSDGEENSGINGVISSDYD
EGENQNSSESTSFVEHPVGSSNNNEKGLKEQSPKLVVRARWLHGPDERDRISASHFRKIF
NCSCGKLEKFLGLDYVELSICGESFMLHQIRKMVGTAIAVKRELLPRDILTLSLTKFSRI
VLPLAPSEVLILRGNSFSVRKKPGNVKRPEMLTLVESEEILKSVDEFYTSVILPQVSKFL
DPSKSPWHDWLENLTLSSIPEAELDDVRTAWKLWKENFRSRTTVMSMDCCN
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtctcttctctgcggttcccgctcttcccatggattatctcgaaccatacttcc
aatcttcgtttctcaaaccctaggattctccctcagtggtcgccccattgttcatcttct
tcatcttcaactgtcactgagtccaatccggaccagtcggtccagaaatgggaatctttt
cggaaaaagaaagtggtaatgcgggtcggatatgtcggcaccaattacagaggtttgcaa
atgcagcgagatgaaagctctttatcaactattgaaggagaattggaaactgctgtgttt
aaggccgggggaattcgtgatagtaattatgggaatctacacaaaattgggtgggacaga
agtagccgaactgataaaggagttcactcattggcaaccatgatatccttaaaaatggaa
ataccagcaaacgcatggaaggaagatcctaatggcattgcacttgcgaattatgttaac
tttcatcttcctaacaatatcaaagttttcagcattttaccatcacaaaggagctttgat
gctagaagggaatgtgatcttcggaagtattcttacctcctcccagctgaaattattgga
attaaaagtaactccagtgcttcagaaattgatcatcatatagcagagttcaacgacata
ttgaatacttttgagaacttatggcctctaataaaggccttcagaaagggagaacatcct
ttccaaaactacacaatacggtctaagtacaggaaacagtttcctgcaaagcaatctcct
ggtaatggtggagtgttcagaagagcaaaatcatctggtgaggcatcaacttctgagttt
gaggtaagtgatggagaagaaaattctggaatcaatggagtgatttcatcagattatgat
gagggagagaatcaaaattcatcagagtccaccagctttgttgaacatccagttggaagt
tccaataataatgagaagggtttgaaggagcaaagtcccaaattagttgttcgtgcaaga
tggctacatggacctgatgagagagatagaattagtgcttcccacttcagaaagattttt
aactgttcttgtggaaagctggagaaatttcttggattagattacgttgagctttccatt
tgtggagagtctttcatgttgcatcaaatccgaaaaatggttgggactgcaatagcagta
aaacgggaattactcccaagagatattttgacattgtcattgaccaagttctcacggatt
gtcctgccccttgccccttctgaagttctaattttgagaggtaacagtttctcagtgagg
aaaaaacctggcaatgtaaaaaggcctgaaatgcttacattggtggaatctgaggaaatt
ctcaagtctgttgatgaattctacacatctgtaattttgcctcaagtttcaaaatttttg
gacccttcaaagtctccttggcacgactggcttgagaacctaactctgtcaagcattcca
gaagctgagttggatgatgtcaggactgcttggaaactgtggaaggaaaatttccggagt
agaaccacggttatgtccatggactgctgtaattga
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