Vitis riparia (riverbank grape): 117916884
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Entry
117916884 CDS
T07274
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117916884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117916884
03009 Ribosome biogenesis [BR:
vri03009
]
117916884
04131 Membrane trafficking [BR:
vri04131
]
117916884
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vri04147
]
117916884
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
117916884
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117916884
Membrane trafficking [BR:
vri04131
]
SNARE
SNARE associated proteins
Others
117916884
Autophagy
Aggrephagy
Other aggrephagy associated proteins
117916884
Exosome [BR:
vri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117916884
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_14
AAA_22
AAA_33
TIP49
NPHP3_N
AAA_17
RNA_helicase
AAA_28
Mg_chelatase
nSTAND3
Parvo_NS1
ATPase_2
Vps4_C
AAA_18
nSTAND_NTPase5
NACHT
ABC_tran
Viral_helicase1
AAA_7
NB-ARC
IstB_IS21
Sigma54_activat
TsaE
AAA_lid_PRS2_C
Zeta_toxin
DUF815
Rad17
RCF1-5-like_lid
Motif
Other DBs
NCBI-GeneID:
117916884
NCBI-ProteinID:
XP_034688984
LinkDB
All DBs
Position
6:4076077..4080273
Genome browser
AA seq
802 aa
AA seq
DB search
MVHQAEASASQASAKKDFSTTILERKKAPNRLIVDEATIDDNSSVSMHSTTIETLKIFRG
DTILIKGKKRKDTVCIAITDDTCEPAKIRMNKVVRSNLRVKLGDVVSVHDCMDIMYGERV
HILPMDDTIEGVTGNLYDAYLKPYFSDNFRPVRKGDLFLVRGGMRSVEFKVVETHPGEYC
VVDPDTEIFFEGKPVRREDEERLDEVGYDDVGGFRKQMAQIRELVELPLRHPQIFKSIGV
KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESEGNLRKAFEEAEK
NAPSIVFIDEIDSIAPKREKTHGQVEKRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP
TLRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALC
TEAALQSIREKMDVIDLEDEAIDAEVLNSMAVTDKHFNTALGTTNPSALRETVVEVPNVS
WEDIGGLEYVKRELQETVQYPVEHPEKFEQFGMSPSRGVLFYGPPGCGKTLLAKAIANEC
QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSNLGDAGG
ADRVLNQLLIEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVSKHVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIEKKRGREEN
PKAMDEDLEEEVAEITASHFEESMKYARRSVSDADIRKYQAFAQQSRGFGSQFRFSEAGP
GGSGSNPLGTSTSGPEEDDLYS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggttcatcaagctgaagcttccgcttcgcaagcctcggccaagaaagacttctccacg
acgattttggagcggaagaaggctcccaatcgtctcattgtcgacgaagcaaccatcgat
gataactcctctgtctctatgcactccacaaccatagagacattgaagattttccgcggg
gatactattctcatcaagggcaagaagaggaaggacacagtctgcattgccattactgat
gacacatgtgagccggcaaagatcaggatgaacaaggttgttaggtcaaatctgagggtt
aagcttggagacgtcgtatctgtgcacgattgcatggatattatgtatggggagcgtgtc
cacatactgccaatggatgacaccatagaaggtgtcactggaaatctatatgatgcatac
ctgaaaccttatttctcggataatttccgccctgtgaggaaaggagatctcttccttgtg
aggggagggatgagaagtgtagagttcaaggttgttgaaacccacccaggggagtactgt
gtggttgatccagacactgaaatcttctttgaagggaagccggtgaggagggaggatgaa
gaaaggttggatgaggttggttatgatgatgttggtggttttcggaaacaaatggctcaa
atacgtgagttagtcgagctgccattgaggcatcctcaaatttttaaatcaattggtgtg
aagccacccaaaggaattctactttatggacccccaggttctggaaaaactttaatagcc
agggctgttgctaatgaaactggtgccttcttcttctgtattaatggacctgagattatg
tcaaaattggctggagagagtgaaggaaatctcaggaaggcattcgaggaagctgagaag
aatgccccatccatagtctttattgatgagattgattcaattgcacctaaacgggagaaa
acacatggccaagttgaaaagcgtattgtttcacagcttttgactctcatggatggactg
aaatcccgggctcatgttattgttattggagctactaatcgcccaaacagcattgaccca
actttgagaaggtttggtcggtttgacagagaaatagacattggtgttccagatgaagtt
ggccgtcttgaagttcttcgcattcataccaagaacatgaagctctctgatgatgttgat
ttggaaaggattgcaaaagatactcacggctatgttggtgctgatcttgctgctctctgc
actgaagctgcacttcagtctattagagaaaagatggatgtgatagacttggaagatgaa
gctattgatgctgaagtactcaattccatggctgttactgataagcacttcaatactgca
ctgggaacaaccaacccatctgctttgcgggaaacggttgttgaagtgccaaatgtcagc
tgggaagacattggtggtcttgagtatgtcaagcgggagcttcaggagactgttcaatat
cctgtggagcatccagagaagtttgagcaatttggtatgtcgccttccagaggggtactt
ttctatggcccaccaggatgtgggaaaactctactggctaaggcaattgcaaatgagtgt
caagcaaactttatcagtgtcaaggggcctgaactgctcacaatgtggtttggtgagagt
gaagccaatgttcgagaaatttttgacaaggctcgacagtcagcaccatgtgtccttttc
ttcgacgagcttgactccattgctactcagagggggagcaatcttggggatgcaggtggt
gctgatcgggtcctgaaccaactcttgattgagatggatggcatgtcagcaaaaaagact
gttttcataattggggctacaaacagacctgacataattgacccagcacttttgcggcca
ggacgtcttgatcagttgatttatattcccctgccagatgaagactctcggcatcagatt
tttaaggcctgcttaagaaaatctccagtttctaagcatgtggatttgagggccctcgcc
aagtacactcaaggctttagtggagccgatattacggaaatatgccagcgagcatgcaag
tatgccataagagagaacattgagaaggacatagagaagaagagggggagagaggaaaat
cctaaggctatggatgaggaccttgaggaagaggttgcagagattacggcctctcacttt
gaggagtcaatgaagtatgctcgcaggagtgtgagtgatgctgacatacgcaaataccag
gcatttgctcagcagtctaggggttttggatcacaattccggttttccgaggcaggacca
ggtggctctggttctaacccattaggaacttctactagtgggccggaagaagatgatctt
tatagttag
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integrated database retrieval system
