Vitis riparia (riverbank grape): 117916892
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Entry
117916892 CDS
T07274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117916892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117916892
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117916892
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117916892
mRNA degradation factors
3'-5' decay
Ski complex
117916892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117916892
NCBI-ProteinID:
XP_034688997
LinkDB
All DBs
Position
6:16157581..16220959
Genome browser
AA seq
1354 aa
AA seq
DB search
MNRIQVGHDASFRVGFSGHSGHLRLEPLPPVERPNPLSSLPDFISPPAFARETPETIKEY
IEDTYLLPRLDPDEFSPEKVGRQWDFDWFDRAKVPLEPSLPRSVVIQKWELPFRRSKKES
ASGKWEPISEEVEVSDLMVGAQDTGPLPRMVGPAKDFIRGSINNRPFRPGGLDDSQSLDR
IPPLGASNGEWVQEVLNGGPALFVPPSFKQGLDLGDLKAYSHSWKVYKGQSALKGKSEEK
LNKLSIQFDDLLKKAWEEDDVAESKEDGHSPESDSIKLEVQLDEVEASSNVGDLESSVLD
EILSVESGSKPGLDGTSDDGGRQKKEAWAVSGGNEGIADHFHELVPDMALDFPFELDTFQ
KEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCG
KFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVNDVERGVV
WEEVIIMLPRHINIVLLSATVPNTIEFADWIGRTKQKQIRVTGTTKRPVPLEHCIFYSGE
LYKICESETFLPQGLKTAKDVHKKKNLSTGGGGSGTYSGPPSAAHDGARAQRRENPGWGK
QNKYSGSQKVGNFYGTGGGNQNSSGSQSNWGSRRSEASLWLLLINKLSKKSLLPVVIFCF
SKNRCDISADKMTGIDLTSSSEKHEIHVFCEKAFSRLKGSDRNLPQVIRLQSLLRRGIGV
HHAGLLPIVKEVVEMLFCRGVVKVLFSTETFAMGVNAPARTVVFDSLRKFDGREFRQLLP
GEYTQMAGRAGRRGLDKIGTVVVMCRDEIPDERDLKHVIVGSATRLASQFRLTYIMILHL
LRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTKTIECIKGEPTIEEYYDMYT
EAEQHSNQILETVMQSSAAQQFLTLGRVVVVKSQSVQDHLIGVVVKAPSAFSKQYIVLVL
KPHLPSTLQTPSESGNLQDKKSGAFPEGHFILPKAKRALEDDYYTSTTSRKASGTVNIKL
PYHGAAAGVSYEVRGIDNKEFLCICIHKIKIDQVGLLEDANNAAYSKTVQQLLGLKSKGH
KYPPALDPLKDLKLKDMTLVETYYKWNSLLQKMADNKCHECVKLEEHIKLAKELKRHKEE
VNALRYQMSDEALQQMPDFQGRIDVLQEIGCIDADLVVQIKGRVACEMNSGEELICTECL
FENQLDDLEPEEAVALMSALVFQQKNTSEPSLTPKLSQAKQRLYNTAIRLGELQAQFKLQ
ISPEEYAQDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAA
AIMGNSALHKKMEAASNAIKRDIVFAASLYITGL
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atgaatcggatccaagtgggccacgatgcctctttccgggtcggattctccggtcacagc
ggccatctccggctggagcctctcccgccggtcgaacgccccaaccctctgagctcgctt
ccagatttcatctcgccacctgcatttgctagggaaacacctgaaactataaaagagtat
atagaggacacgtatctcttgccaagattggaccctgatgagttttctccagaaaaggtt
ggaagacagtgggattttgactggtttgatagggcaaaagtacctctagagccatcattg
ccacggtcagtggtgatccagaaatgggaattaccctttagacgttcaaagaaagaatca
gcttcaggaaaatgggaacccatatcagaagaggttgaggtatcagatctaatggtaggg
gctcaggatactggtcctctgccccgcatggttggaccagcaaaggatttcatacgagga
agcatcaataatcgccccttccgtccgggtggtttggatgattctcaatctctggacagg
attcctcctcttggtgcttctaatggtgaatgggtacaggaggttcttaatggtgggcct
gctctgtttgttcctccaagctttaagcaagggttagatcttggtgatctcaaggcttat
tctcactcatggaaagtctacaagggccagagtgcactcaagggaaaatcagaggaaaag
ctgaacaagctgtccatacaatttgatgacttactcaagaaagcttgggaagaggatgat
gttgcagaatccaaggaagatggtcattcaccagaatcagattccattaagttggaagtt
caattggatgaggttgaagcatccagcaatgttggtgatcttgaatcgtcagtgttggat
gagattttgtctgtggaatcaggatcaaagccaggattggatggaactagtgatgatggt
ggacgacagaagaaagaggcctgggctgtcagtggaggtaatgaagggattgctgatcac
tttcatgaacttgtccctgacatggcgcttgattttccttttgaattggatacattccaa
aaggaggctatctattatcttgaaaagggggattctgtttttgtggctgctcatacatca
gctggcaagacagttgtcgcagaatatgcatttgctttggcctcgaagcactgcactaga
gctgtctatactgctccaattaaaactatcagcaaccaaaaatatcgagatttctgtgga
aagtttgatgttggccttctcactggggatgttagcttgagacctgaggcttcctgtctc
atcatgaccactgaaattttaaggtcaatgctctacaagggtgctgatataatacgtgac
attgaatgggttatatttgatgaagtgcactatgtcaatgatgttgaaagaggtgtcgtt
tgggaagaagttattatcatgcttccaagacatattaatattgttctcctctcagcaacg
gtacctaacacaattgaatttgctgactggattggtcggacaaagcaaaagcaaatccgt
gttactgggacaacaaaaaggccagtcccattggagcactgcatattttactctggagaa
ctttacaaaatatgtgaaagtgaaacttttctgcctcaagggttgaagactgctaaagat
gtgcacaagaaaaagaatttgagcactggtggaggtggttctggaacatattctgggcct
ccttcagcagcccatgatggggctcgagctcagagacgtgaaaatcctggttggggcaaa
cagaataagtattctggatctcagaaagtgggaaacttttatgggactggtggggggaac
caaaacagcagcggtagccagagcaactggggttcaagaagatcagaagcttccttgtgg
ttgttgctcattaacaagctttcaaagaagtcactgttacctgtggttatattttgtttc
tcgaagaatcgctgtgatatctcagctgataaaatgaccgggattgacctcacaagcagt
tctgagaaacatgagattcatgttttctgtgaaaaagcattttcacgactaaaggggtct
gacaggaacctaccgcaggttatcagacttcaaagtcttcttcgtagagggattggtgtg
catcatgctgggctgcttcccattgttaaggaagttgttgaaatgcttttctgccgtggc
gtggttaaggttttgttttcaacagagacatttgcaatgggtgttaatgccccagccaga
acagttgtttttgattctttaaggaagtttgatggcagagaatttagacagttacttcct
ggagaatacactcaaatggcaggtcgtgctggcagaagaggacttgataaaattggtaca
gttgttgtaatgtgccgtgatgaaatcccagatgagagggatttgaagcatgttatagtt
ggaagtgcgacccggcttgcatctcaatttcgtctcacctatattatgatcctgcatctc
cttcgtgttgaagaattaaaggtggaagacatgttgaaaaggagttttgctgaattccat
gctcaaaagaagcttccagaaaaacaacaacttttaatgcgaaagcttgctcagcctaca
aaaactatagaatgtataaagggggaaccaacaattgaggaatactacgacatgtacact
gaggctgagcaacatagtaaccagatattggaaacagtcatgcagtcctctgctgcccaa
caattccttactcttggaagggtggtagttgtgaaatcacaatctgtacaagaccactta
attggagttgtagtgaaagcaccatctgcttttagtaaacaatacattgttttagtgctg
aagcctcatttaccatcaacattgcaaactccatctgaaagtggtaatttacaagataaa
aaaagtggcgctttccctgaaggtcattttattttgccaaaagcaaaacgagctcttgaa
gatgactattatacttctactacttctcgaaaggcatcaggcactgtcaacattaaatta
ccttatcatggtgccgctgctggggtgagttatgaagttagaggaattgataataaagag
ttcctgtgcatttgcattcataaaataaagattgatcaagttgggcttcttgaagatgcc
aacaatgctgcttactccaagactgttcaacagttgttggggctgaaatcaaagggacat
aaatatcctcctgccctagacccattgaaagatctaaagttgaaagacatgactcttgtg
gaaacatactacaaatggaatagcctattgcaaaagatggcagataataagtgccatgaa
tgtgtaaaattggaggagcacattaagttagcaaaagaattgaaaaggcataaagaagaa
gttaatgctctgaggtatcaaatgtcagatgaagcacttcagcagatgccagattttcag
ggccgaatagatgttctgcaggaaattggatgtatagatgctgatcttgtagttcagatc
aaagggcgtgttgcttgtgagatgaattctggggaggagttgatttgcacggagtgtttg
tttgagaaccaactggatgacctggaaccagaggaagcggtggcgttaatgtctgcccta
gtgtttcagcagaagaatacttctgaaccttctcttactcccaagctgtctcaggctaaa
cagaggttgtacaatacagccattaggctgggggagctacaggcgcagttcaagctacaa
ataagccctgaggagtatgctcaagacaatctcaagtttggccttgttgaagtggtttac
gaatgggcaaagggaactccatttgcagatatctgtgagctcacagatgttcctgaagga
ctgatagtgaggaccattgtcaggctggatgagacatgccgtgaattcagaaatgcagcc
gcaattatgggtaattctgcactgcataagaaaatggaagctgcttccaatgccataaaa
cgtgacattgtatttgcagctagcttatacatcactggactttga
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