Vitis riparia (riverbank grape): 117917148
Help
Entry
117917148 CDS
T07274
Name
(RefSeq) protein CHROMATIN REMODELING 5 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117917148
03036 Chromosome and associated proteins [BR:
vri03036
]
117917148
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117917148
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117917148
SLIK complex
117917148
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
SWI2_SNF2
Chromo_MIT1
OAM_alpha
Motif
Other DBs
NCBI-GeneID:
117917148
NCBI-ProteinID:
XP_034689285
LinkDB
All DBs
Position
6:4752543..4806091
Genome browser
AA seq
1760 aa
AA seq
DB search
MAFFRNYSNETVAQSVLDEKGQGQNINRVHSSVGNEYVDATSSEKDFESKVDGQYQSDGD
TNDAGLQNEAAAADDIGLRISNLQPSGRRTAMAGKWGSTFWKDCQPMGHRNGSESEQDSK
CRFDCKNEEALEDNSSDGREVDKVQKGQNDVPADEMSSDDYYEQDGEDQSDSLHYRGLNH
SSVLNSQPQSRPVAVNMARNSKASNDNEYDDDEDGDNDGDADYEDEDEEEEDEDDPDDAD
FEPDYGVTSSRTANKYQDKDWNGEDSDEDDNSNDDLDVSDEDDAYYMKKPKGRLRGNSGR
GLKPTKEHKSFPAPGRRKRGRTSLEDEDSYEKDSENDSDEDFKSMTRRGAHLRKSKGGQS
STTANIIGRNSELRTSSRSVRKVSYVESEESEEIDEGKKKKSQKEEIEEEDCDSIEKVLW
HQPKGMADEALKNNKSTEPILLSHLFDFEPNWNEMEFLIKWKGQSHLHCQWKSFSDLQNL
SGFKKVLNYTKKVMEEVKYRNMFSREEIEVNDVSKEMDLDLIKQNSQVERIIAYRIGKEG
SGDVMPEYLVKWQGLSYAEATWEKDVDIAFAQDAIDEYKAREAAAAIQGKMVDMQRKKSK
ASLRKLDEQPGWLKGGQLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFL
QNAQQIYGPFLVVVPLSTLSNWAKEFKKWLPDMNVIVYVGTRASREVCQQYEFYTNKKTG
RTILFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSAKNKLLI
TGTPLQNSVEELWALLHFLDPDKFKNKDDFVQNYKNLSSFNEMELANLHMELRPHILRRV
IKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKC
CNHPFLFESADHGYGGNRSTNDCGKLERLILSSGKLVLLDKLLEKLHETNHRVLIFSQMV
RMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLA
TADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIYRFVTSKSVEENILKRAKQKMVLDH
LVIQKLNAEGRLEKKESKKGSYFDKNELSAILRFGAEELFKEDKNEEESKKRLLSMDIDE
ILERAEKVEEKETGEEGNELLSAFKVANFGSAEDDGSFWSRWIKPEAVAEAEDALAPRAA
RNTKSYAEANQPERISKRKKKAAEPQERAQKRRKADYLVHLVPRIEGAAAQVRGWSYGNL
PKRDASRFSRAVLKFGNPSQIGSIVMEVGGTIEAASTEAQIELFDALIDGCREAVKEGNL
DPKGPILDFFGVPVKANEVLNRVQELQLLAKRISRYEDPIAQFRVLMYLKPSNWSKGCGW
NQIDDARLLLGIHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRASAL
LEMELVAVGGKNTNTKASRKTSKKEKERENLMNISISRSKDRKGKPGFPVTNVQMRKDRS
HKPHRVEPLVKEEGEMSGNEEVYEQFREVKWMEWCEDVMKTEIKTLNRLHKLQTTSANLP
KDLVLSKIRKYLQLLGRRIDQIVLEHDKEQYKQDRMIMRLWNYISTFSNLSGEKLRQIHS
KLKQEQDEDGGVGSSHINGSAWGPGDKDSDPGQFPSFHRHGERPPRGYKNMSAYQTAEPV
SKSHDAGKFEAWKRRRRADNINTQPLPQRPMSNGSRLPDPNSLGILGSGPTDNRRFGNEK
PSRMRQSGYPPRQGFSSVIK
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atggctttctttagaaactactcgaatgaaacggtagcacagagtgtcctggatgagaag
ggccaagggcaaaacattaatagagttcacagttcagtaggaaatgaatatgtagatgcg
acttcaagtgaaaaggattttgaatcaaaggtggatgggcaatatcaaagtgatggtgat
acaaatgatgctgggctgcaaaatgaggcagcagctgctgatgatattggtttgagaata
tcaaatttgcagccctctggaaggagaacagctatggcagggaagtggggttcaaccttt
tggaaagactgccaacccatgggtcatcggaatggttctgaatctgagcaggattcaaaa
tgtcgttttgattgtaaaaatgaggaagcattggaagacaattcatctgatggcagggaa
gttgacaaggttcagaagggtcaaaatgatgttcctgcagatgagatgtcatctgatgat
tactacgaacaggacggggaagaccaaagtgactcgttacattacagaggtttaaatcat
tccagtgtcttaaactcacaaccacagtcaagacctgttgctgtaaacatggctcggaat
tcaaaagcttcaaatgataatgaatatgatgatgacgaggatggtgataatgatggtgat
gctgattatgaagatgaggatgaggaagaggaagatgaagatgatcctgatgatgcagat
tttgaacctgattatggtgtcactagcagcagaactgccaacaagtaccaggataaggac
tggaatggtgaagattctgatgaagatgataatagcaatgatgatctagatgtctcagat
gaggatgatgcatattatatgaagaaacccaagggtagactacgaggtaacagtggacgt
ggtttaaaacccacgaaagagcataaatcattccctgcacctggtcgaagaaaaagaggc
agaacgtcattggaagatgaagattcttatgaaaaggattccgaaaatgatagtgatgag
gatttcaaaagcatgacaaggagaggtgcacatctccgaaaaagtaaaggtggtcagtcc
agtactacagcaaatatcattggacggaacagtgagctccgcacctcaagtagatcagtg
aggaaggtatcatatgttgaaagtgaggaaagtgaagaaattgatgaaggcaagaagaaa
aagagccaaaaggaggaaattgaagaggaagattgcgattcaatcgaaaaggtgctttgg
catcagccaaaaggcatggccgacgaggctctaaagaataataaatcaacagagcccatt
ctgttaagccacttgtttgactttgaacccaactggaatgagatggagttcttaataaaa
tggaaaggccagtctcatttgcactgtcagtggaaatcattttctgatctacaaaatctt
agtggttttaagaaggttttaaattacaccaaaaaagtgatggaggaagtgaagtacagg
aacatgttttcacgtgaggagattgaagtcaatgatgtaagcaaggaaatggacttagac
ctcattaaacaaaatagtcaggtggagagaataattgcatacagaattggtaaagagggc
tcaggtgatgtgatgccagagtatttagtcaagtggcagggactctcatatgctgaagca
acatgggagaaggatgtagatattgcatttgctcaagatgctattgatgagtacaaggct
cgtgaagctgcagctgccatccaaggaaaaatggtggacatgcagcgtaagaagagtaaa
gcaagtttaaggaagcttgatgagcagcctgggtggttaaagggaggacaacttcgtgat
tatcagcttgaaggcttgaattttcttgttaacagctggagaaatgatactaatgttatt
ttggctgatgaaatgggtcttggcaaaactgtgcagtcagtttctatgcttgggtttttg
cagaatgctcaacaaatatatggaccatttcttgttgttgtaccattatcgactttatca
aactgggcaaaagaattcaagaagtggcttcctgacatgaatgtcattgtttatgttggg
acccgtgctagccgagaggtttgtcagcaatatgaattttacactaataagaaaactggc
aggactattctattcaatgctttattgactacttatgaagtagttctgaaggacaaggct
gtgctttctaagatcaaatggaactacctcatggttgatgaagcccacaggttaaagaac
agtgaagcacaattgtatacaaccctctcggaattcagtgccaagaacaagttgctgatc
actggtactccattacagaacagtgttgaagagctttgggctctacttcacttccttgat
cctgataaattcaagaacaaagatgattttgttcagaattacaagaatcttagctcattc
aacgaaatggagcttgcaaatcttcatatggaattgaggccccatattcttcgaagagtt
atcaaggatgtagagaagtctttgcctccaaaaattgaacgtattcttagggttgaaatg
tcccctcttcaaaaacagtattataagtggattttggaacgcaatttccatgacttgaac
aaaggagttcgtgggaatcaggtttcacttctaaatattgttgtagaattgaagaaatgc
tgcaatcatccttttctatttgaaagcgcagaccatggttatggtgggaacagaagtacc
aatgactgcggtaaactggagaggcttattttaagcagtgggaagctagttttacttgat
aagctacttgagaaattgcatgagacgaatcatcgtgttctaatattttctcagatggtt
agaatgttggatatactggcagaatatatgtcacttagagggttccaatttcagcggctt
gatggtagtacaaaggctgagttgcgtcagcaggcaatggatcattttaatgcacctgga
agtgatgatttctgtttcctcctttcaacccgtgctggtggcctgggcattaaccttgca
actgcagacacagttattatatttgattctgactggaatccccaaaatgacttacaggca
atgagtagggctcatagaattgggcaacgagaagtagttaacatctaccgatttgttaca
agcaaaagtgttgaggaaaatattctgaagcgagccaagcaaaagatggtacttgatcat
ttggtgattcaaaaactaaatgcagaaggtagactggagaagaaagaatcgaaaaagggg
agttactttgacaaaaatgagctgtcggctattttaaggtttggggcggaggaacttttt
aaggaagacaaaaatgaagaagaaagcaaaaagaggctcttaagtatggatattgatgaa
attcttgaaagagcagagaaagtagaagagaaggaaactggagaggaagggaatgaatta
ttgagtgcttttaaggttgcaaatttcggtagtgctgaagatgatgggagtttctggtcc
cgttggataaaaccagaagctgtagcggaagctgaagatgctttagctccacgtgctgca
agaaataccaagagctatgctgaggctaatcaacctgagagaattagtaaaaggaaaaag
aaggctgctgaaccacaggagagagctcagaagcgccgcaaagcagattatttggttcat
ttagtgccaaggattgagggagcggctgctcaagtaaggggttggtcttatggtaacttg
ccaaagagagatgcatcacgtttttctcgtgcggtattgaaatttggaaaccccagtcaa
attggctcaattgtcatggaggttggtggtacaattgaagcagcttcaactgaagcacaa
attgagctttttgatgcattaattgatgggtgtagagaagcagttaaagaaggaaatcta
gacccaaaggggcctatattggacttttttggtgtcccggtaaaagctaatgaagtactt
aaccgtgttcaagaacttcagctcctagctaagcgcatcagtcgctatgaagatcccatt
gcccagttccgggtgttaatgtacctcaaaccttcaaattggtctaaaggttgtggctgg
aatcagattgacgatgccagattgcttcttggaatacattatcatggatttggcaattgg
gaaaagataagattagatgaaaggctgggtctcacaaaaaagatcgctccagttgaactt
caacaccacgaaaccttcctacctcgtgctcccaacctgaaagaccgtgcttctgcactt
ctggaaatggaacttgtagctgttggtgggaagaacaccaataccaaagctagtcgcaag
acttctaaaaaggagaaggagagagagaatcttatgaatatctcaatatctcgcagcaag
gacaggaaaggaaaacctggttttcctgtaactaacgttcaaatgaggaaggatagatcc
cataaaccccatagagttgaacctttagtgaaagaggagggtgaaatgtccggtaatgaa
gaagtatatgagcagttcagggaagtgaaatggatggaatggtgtgaagatgtcatgaag
acggagattaagaccctgaaccgtcttcacaaattacaaactactagtgctaatcttcca
aaggatttggtgctttcaaaaattcggaagtatttgcagcttcttggacgaaggatagac
caaattgttctggagcatgacaaggaacaatataaacaagacagaatgatcatgaggttg
tggaactacatctcaactttttcaaatttgtctggggagaagcttcgtcagattcattca
aaacttaaacaggagcaagatgaggatggaggggtaggatcatctcatatcaatggttct
gcatggggtcctggtgacaaagacagtgatcctggtcagttcccttcttttcatcgccat
ggtgagagaccaccaagagggtacaaaaatatgtctgcctatcaaacagcagaaccagtt
tctaagagtcatgatgctgggaaatttgaagcatggaaacggaggagaagagctgataat
attaacactcagcccctgcctcaaaggccaatgagcaatggttcccgtttacccgatcca
aattctttggggattcttggatcaggaccaactgataacagacgttttggtaatgagaag
ccttctaggatgcgtcaaagtggttatcctccccgacaaggtttctcatcagttatcaag
tag
DBGET
integrated database retrieval system
