Vitis riparia (riverbank grape): 117917342
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Entry
117917342 CDS
T07274
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
117917342
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
117917342
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
117917342
NCBI-ProteinID:
XP_034689477
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Position
7:complement(6400174..6404820)
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AA seq
643 aa
AA seq
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MGFAGLVFSNDSILSSQSLSSEVSHKVEMNNGIVKITVSRPYGNLRGIKYHGVENLLDDS
LDRDDRGYWDCSWEDVNGSNGKQSMILGDRFQVIMQTNNQVEVSFKTTWKSSDPLPALNV
DKRYVMLSGSSGFYTYAIYERLKGWPGMFLWETRIVFKLSQKWFQYMAISDTRQRIMPTI
ADRERGQSLAYPEAVLLKNPLNSELEGEVDDKYQYSSESKNDRVHGWISLNSGIGFWIIT
PSYEFRTAGPLKQDLTGHVGPICLSMLMSAHYTGVPLNVTFENGEPWKKVFGPVFIHLNS
VSDKTKATSLWGDAKQQTWKEIISWPYSFPHSPDFLKSDQRGSVIGQLSIQDEYLKVGNG
PARFAHVGLAAPGDARSWEYQTKGYQFWTRTDEHGNFFIKAVLPGAYNLHAWVSGVMGNY
MYEATVTVTPGSVTKLPPLVFKPPRDGPTLWEIGIPNRHAAEFYVPNVTKNINTLYLEQD
KFRQYGLWERYAELYPENDLVFTVGTSDYAKDWFFAHVLRRLPDGKLKATTWQIVFDLPK
VDKAGTYKLRLVLAAAHMAEVQVRVNRRDAIRPDFTTGLTGRDNAIARHGIHGVQRSFTA
ALPGSLFVNGRNTIFLHQPRNQEAFQGVMYDYIRLEGPPQSTH
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgctggtttggttttcagtaatgattcaattctttcttctcagtcactgtca
tctgaagtatcccacaaggtggagatgaacaatggcattgtgaaaatcactgtgtcacgt
ccctatggtaatttacggggaataaaataccatggagtggagaatttgcttgatgatagt
ctcgatagagatgatagagggtattgggattgctcctgggaagacgtgaatggtagtaac
ggtaaacaatcgatgattttaggagaccgattccaggttataatgcaaactaataatcaa
gttgaggtttcattcaagacaacatggaaatcttcggacccattgcctgctttaaatgta
gacaaaaggtatgtaatgctgagtggctcctccgggttctacacatacgccatatacgaa
cgcttgaaaggatggcctggcatgtttctctgggaaaccaggattgttttcaagctttct
caaaagtggtttcaatacatggcaatctcagacaccaggcaaaggataatgccgacgatt
gcagaccgagagagaggtcaatcccttgcctacccagaagctgttctgttgaaaaaccca
ttgaattctgagttggaaggagaggtggatgataaataccaatactcaagtgaaagcaaa
aatgacagggtgcatgggtggatcagcttaaactcaggaataggattctggatcatcaca
cccagttatgagttccgtacggctggacctctcaagcaagatcttactggccacgttggc
cccatctgcctctctatgcttatgagtgctcattacactggagttcctctaaatgttaca
tttgaaaatggagagccatggaagaaggtttttggtcctgttttcatccatctaaactcg
gtttcagacaaaacaaaagccacgtcgctgtggggcgatgctaaacaacagacgtggaaa
gaaattataagttggccatatagcttcccacactcaccagacttccttaagtctgatcaa
cgtggatctgtcatcggtcaattatcaatccaagacgaatacctcaaagttgggaatggg
cccgcaaggtttgcacatgtgggtttggctgcaccaggagatgcaagatcatgggaatac
caaaccaagggttatcagttctggactcgaacagatgagcatgggaatttcttcattaaa
gccgtcctacctggggcctataatttgcacgcatgggtctctggtgttatgggaaattac
atgtatgaagctactgttaccgttactccaggatctgtaaccaaactgcctcctcttgta
ttcaagcctccaagagatggccctacactctgggaaatcggcatccccaaccggcatgct
gccgaattctacgtgcccaatgtcaccaagaacattaacacattatacttggagcaggac
aagttccgacaatatggattatgggagaggtatgcagagttatatcctgagaacgatctt
gtcttcacagttggcactagtgattatgcaaaagactggttctttgctcatgtgttaagg
agattaccagatggaaaactcaaggcaaccacatggcagattgtatttgatcttccaaag
gtggacaaagccggaacttataaactccgattggtgttggcagctgctcatatggctgaa
gttcaggttcgggtgaaccgcagagacgccatcaggcccgactttacaacaggactaaca
gggagagataacgccattgcgagacatgggattcatggggtgcagcgctctttcactgct
gctctaccaggatccctatttgtgaatgggcgcaacacaatctttctgcatcagccaaga
aatcaagaggctttccaaggagtaatgtatgattacatccgtttggaaggtcctcctcaa
agcacacattga
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