Vitis riparia (riverbank grape): 117917346
Help
Entry
117917346 CDS
T07274
Name
(RefSeq) rhamnogalacturonate lyase-like
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
117917346
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
117917346
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
117917346
NCBI-ProteinID:
XP_034689480
LinkDB
All DBs
Position
7:6420664..6424292
Genome browser
AA seq
616 aa
AA seq
DB search
MEVVMDNGIIQLTLAKPEGSVVGIKYKGVENLLSHRYKESSRGYWDCVWQENGQWVFLGN
SFRVINQNESQVEVSFKRPWDPSDDSGPRLSVDKRFIMLRGSSGFYAYAIYERLQGWHGT
SLWQTRLVFKLKEDLFDYMAISDTRQRVMPTAEDRARGKPLAYPEAVLLTNPSNPDLKGE
VDDKYQYASDSKDNKVHGWISQKSGVGFWIITPSDEFRISGPLKQELTSHAGPVSLSVFT
SSHYVGKPEEEIFKDGEAWKKVFGPIFIYLNSVSNKKEALSLWNDAKQQMLKEVDSWPYS
FPLSQDFPKSHQRGSVEGRLLVLDKYVSHLPQLVLHSSLSYVGLGLPGEAGSWQTETKGY
QFWTQADKEGNFSIRAVRAGTYNLFAWVPGIMGDYKYDAIITIKPGNKIKLGNIVFEPPR
HGPTLWEIGIPDRTAAEFFVPDVDPKFINKLYVKQDKFRQYGLWDRYAEIYPNQDLVYTV
GKSDYRKDWFFAHVNRHVTDDTFLGTTWQIVFDLPVVDMAATYKFRLVLAGASLAQLQVR
LNDPNATRPLLSTKLIGRENLIARHGIHGLLRSYTTDIPGFLFVEGCNTIYLTQTRASNS
FQGVMYDYIRLEGPPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggtgatggataatggcatcatacaactcaccttggcaaaaccagagggttct
gtggtgggaataaaatacaaaggagttgaaaatttacttagtcaccgttacaaagaaagt
agtagagggtattgggattgcgtttggcaagaaaatggacaatgggtttttttagggaat
agttttcgagtcataaaccaaaatgaaagccaagtggaggtctcattcaaaagaccatgg
gatccttccgatgattcagggcctcgtttaagcgtcgacaagaggttcataatgttgcgt
ggctcctcagggttctatgcatatgccatctatgaacgcttacaaggatggcatggcaca
tctctgtggcaaaccagacttgttttcaagcttaaagaagacctgtttgactacatggcc
atctcggacaccagacaaagggtgatgccaacggctgaagatcgtgcaaggggtaagccc
cttgcctacccggaagctgttctgctaacgaacccatccaaccctgacctcaaaggagag
gtggacgacaaataccaatacgcttctgatagcaaagacaataaggtacatgggtggatc
agccagaaatctggagtagggttctggattatcacgcccagtgatgaattccgaatttct
ggacctctcaagcaagagctcacctctcatgctggccctgtctccctttctgtgtttacg
agttctcattacgttgggaagcctgaagaagaaatatttaaagacggggaagcatggaaa
aaggtttttggtcctattttcatttatctgaactcggtttcaaacaaaaaagaggccctt
tcactctggaacgacgccaaacaacagatgttgaaagaagttgacagctggccatatagc
ttcccactctcacaggacttccccaagtctcatcaacgcggatctgtcgagggtcgttta
ctagtcctggacaagtatgtctctcacctccctcaactggttttacattcaagcctttct
tacgtgggattgggtctacctggtgaagcaggatcatggcaaacagagaccaagggttat
cagttttggacacaagctgacaaggaggggaatttctccattagagctgtccgagccgga
acctacaatttgttcgcctgggttcctggtatcatgggggattacaaatatgatgccatt
attaccatcaaaccaggaaataaaatcaaactgggcaatattgtatttgagcctccaaga
catggacctacactctgggaaatcggcatcccagaccggacggctgctgaattcttcgtg
cccgacgtcgacccaaaatttattaacaaactatatgtcaaacaagacaagttccggcaa
tacggattatgggaccggtatgcagaaatatatccaaaccaggatctcgtgtacactgtg
ggtaaaagtgattaccgaaaagattggttctttgctcatgtgaacaggcacgtaaccgat
gacacattcctaggaaccacatggcagattgtatttgatcttccagttgtggacatggcc
gccacttacaaatttcgattggtgttggcaggagcaagtctggctcaattgcaggttcgg
ctcaacgacccgaatgcgacacggccacttctatcaacaaaactaatagggagggagaac
ctgatagctagacatgggattcatgggctactacggtcgtatactacagatatacccggg
ttcctctttgttgaaggttgcaatacaatctatttgactcagacgcgagcctcaaactct
ttccagggagtcatgtatgactacatccgtttggagggtcctccccagtag
DBGET
integrated database retrieval system
