Vitis riparia (riverbank grape): 117917400
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Entry
117917400 CDS
T07274
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
vri03015
mRNA surveillance pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117917400
09122 Translation
03013 Nucleocytoplasmic transport
117917400
03015 mRNA surveillance pathway
117917400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117917400
03041 Spliceosome [BR:
vri03041
]
117917400
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117917400
Spliceosome [BR:
vri03041
]
Complex C
Other components
EJC/TREX
117917400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
117917400
NCBI-ProteinID:
XP_034689559
LinkDB
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Position
7:complement(3616806..3623533)
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AA seq
691 aa
AA seq
DB search
MSSPYQVLDNRPIDQWRVTELKEELKRRKLTTKGLKEDLVKRLDEVLRNERENAEEDVDN
GFDHPPSPEAMNKAAEEALLVTKTDNEHVAISDYRNKKVDGATIQVDIDDSAAALVQRKD
LEEITGGTDSMVDKKQDIHAISVKTSTMVSESVVSEKAQGGQEEQNNETQKERGASKPQP
EEDSKSTHDDVMLKSSDPNNQVSEVSPVLGFQVKSDSISTDSVSINEKNELKDNIIADNV
KLDLDVIKPEMVEPSSSSVVPDGGEMHPMDVEEPHEKKVPVEETDNNHATNADLNKKNDS
ADMGSSEKLNLDRSSGDDSMEEDILESKQIDSKYNSDEVGDRSEQTEVLVVKEEGHVNVV
GDVPSADKKGIHVETKDRPVAPPEKRKLQDTAGGNIESSKRQRRWNAESLKVPEPLSSNL
SPSTTPKDAFQATTLKRNFSRSDSTVSEDAPKERVVPPSPKPPTNSLRIDRFLRPFTLKA
VQELLGKTGSVTSFWMDHIKTHCYVSYASVEEAMETRNAVYNLQWPSNGGRLLVAEFVDP
QEVKMRVEAPQAPAAPVNVGPTVPPSPPAKQPQPPPRKQVTRQQLPPPPPLPPPPPLSNP
PQTRERLPLPPPPPLPEKVDPPIVTLDDLFQKTKATPRIYYLPLSEEQVAAKLKAQGKNT
KQSAGVACGKEGGSGRMMTAFWVFRRLLSLG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccccttatcaagttcttgataatcggccaattgatcagtggagagttacagag
ttaaaagaagaactcaagagacgaaaattgacgacaaagggtttgaaggaggatctggtt
aaaaggttggatgaagtacttcgtaatgaaagggaaaatgccgaggaggatgttgataat
ggttttgatcatcctccttcacctgaagccatgaacaaagctgcagaggaagcgctgctt
gttacgaaaactgataatgaacatgtggctattagtgattacagaaacaagaaagtggat
ggtgctacaattcaggttgacattgatgacagtgctgctgccttggttcaaaggaaagat
ttagaggaaataactggtggtactgattctatggtagataagaagcaagatattcatgca
atttctgtcaaaaccagcaccatggttagtgagagtgtggtatctgaaaaggcacagggt
gggcaagaggagcagaacaatgaaacccagaaggagagaggggcttcaaagccccagccg
gaggaggattcaaagtctacacatgatgatgtcatgctcaagtcttctgatccaaacaac
caggtatctgaggtcagccctgttttagggtttcaagtaaaatctgattctatttctact
gattctgtgtcaattaatgaaaagaatgaactaaaggataacataattgctgataatgtg
aaattagacctagatgttattaaacctgagatggtggaaccatcatccagcagtgttgta
ccagatggtggcgaaatgcatccaatggatgttgaagagccacatgagaaaaaagtacct
gttgaagaaacagataacaaccatgctacaaatgcggacctgaacaagaagaatgatagt
gcagatatgggatcttcagagaaattgaatttagacagaagttctggtgatgattccatg
gaagaggatatattagagagtaagcaaatcgattcgaagtataattctgatgaagtgggg
gacaggagtgagcaaactgaagtgcttgttgtaaaggaggaaggtcatgttaatgttgtg
ggcgatgttccatctgctgacaagaaagggatccatgtcgagactaaggacaggcctgtt
gcaccccctgagaaaaggaagcttcaagatacagcaggtgggaacatcgagtcttcaaag
agacaacgcaggtggaatgctgaaagcctcaaagttcctgaaccactaagctctaatctt
tctccttccacaacacctaaggatgcttttcaggctactactttaaaacgaaatttctcc
agatctgattctacagtcagtgaggatgcgcctaaggaacgtgtcgttccaccatcacca
aaacctcctactaattccctaagaattgatcgtttcctgcgtccttttaccctgaaagct
gtgcaagaactcctaggaaaaactggaagtgtcaccagtttctggatggaccacataaaa
acacactgctatgtctcttatgcatcagtggaggaagccatggagacacgaaatgcagta
tataacctacaatggccttcaaatggaggacgcctcctggtggctgaatttgttgaccct
caagaagtcaaaatgcgggtggaggctcctcaggctccggctgctcctgtcaatgttggt
cctactgttcctccttcaccacctgccaagcagcctcagcctccccctcgtaagcaggtt
acacggcagcagcttccacccccaccccctcttccacctccaccacctttgtcaaaccca
ccccaaactagggagcggcttcctcttccacctccacctccactacctgaaaaagttgac
cctcccatcgtaacactggatgatctatttcagaaaactaaagcaactcctcgaatctac
tacctacccttgtctgaagaacaagttgctgcaaaacttaaggcacagggcaaaaacaca
aagcagtctgcaggtgttgcttgtgggaaggaaggaggatccggtcggatgatgacagca
ttttgggttttccgaagattgctttctttggggtag
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