Vitis riparia (riverbank grape): 117917726
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Entry
117917726 CDS
T07274
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117917726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117917726
Enzymes [BR:
vri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117917726
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117917726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
117917726
NCBI-ProteinID:
XP_034689986
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All DBs
Position
7:11842504..11857296
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AA seq
610 aa
AA seq
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MWLQRRGLCTKREWRVKQVTKSNFSQTLESLKPQISQSDFVAVSLQKTGSFSAPWHRVLP
FDTPQTAYSKARFAADKFQVFQFAVCPFSVRASKVVAHPYNFHLFPRDELKIGMPSYSFS
CQTSYLASMAREGFDFNVCIYDGISYLSRAQESVANARIGNPIPSNNVKTSSSTPSVADA
VFIERIKSRVKHWKSACRDSSTRADEALVKSLRKLILGSEEYRSRPCVNLDVCSEHQVQL
VLEVLGEFFDDLVPLLIPAKGGGTQAVRVILTSSEEDKDLLKRELQDLEEEQNKRVCGFR
EVIDLISASQKPVVSHNSLNEFAFIHSKFLSPLPPNMDEFMCSLRMVFPHVLDVNHLMKE
IGPLKKVTNLSAAASCLKRRFFVPIDMEIPHQASNEDKIHGHNVLKISHLLANLCSILKI
TPEMIQSDGGHLASALEGYANIFHPHSTNTEDPIDGDIKVWTDDTRKVSSEDLVFIWGFR
GRMSAGGLKRLLQGSHSVFSEEFDVRMVDGSCAIVVFWQSGLSQTFLEAISSNGISGLLR
EMVSEGLRAAGYETYKKTCSLGFWEADLADSLDKALAEPDHNSEADSETKPTGPSQIYWS
RDSIINLDEL
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtggttgcagagacgagggctgtgcacgaagcgggaatggagagtcaaacaggtgacc
aaatccaacttctcccaaaccctagaatctctcaaaccccaaatctcccaatccgacttc
gtggccgtctctctccagaaaacgggctccttctccgccccgtggcaccgcgttttgccc
ttcgacaccccccaaaccgcctactccaaggccaggttcgccgccgacaaattccaggtc
tttcaattcgccgtctgcccgttctccgttagggcttccaaggtcgtcgcccacccatat
aactttcatttgttccctagggatgagttaaaaatagggatgccatcttacagtttttca
tgtcaaacatcgtatttggcgtccatggctcgggaaggttttgattttaatgtctgcata
tatgatggcatatcatacttatccagagcgcaagagtctgtggcaaatgctcgaattggg
aatccaatacccagtaacaatgtgaagacatcgtcttctaccccttcagttgctgacgct
gtttttatagaaaggattaaatcacgggttaaacattggaaaagtgcatgtagagactcg
agcacaagagcagatgaggctctagtgaagtccctgagaaaacttattttggggagcgaa
gagtacagatcaagaccatgcgtcaatttggatgtttgtagtgaacatcaagtgcagctt
gtcctagaggtgctgggggagttctttgatgaccttgtcccgttactaatcccagcaaag
ggtgggggaacccaggcagttcgagttatcttgacaagttcagaagaagacaaggatctt
ctgaagagggaacttcaagatcttgaagaggaacaaaacaagagagtttgtggctttcga
gaggtgatcgatttgatttctgcttcccagaaacccgttgtctctcacaactcccttaat
gagtttgcatttattcattcaaaattcctttctcctcttcctcctaacatggatgagttc
atgtgctccttgcgcatggtttttccccatgtacttgatgtcaaccatttgatgaaggag
attggccctctgaaaaaggtcaccaatttatcagcagctgcttcatgcttgaagagacgg
ttctttgtgcccattgatatggaaattcctcaccaagcttcaaatgaagacaagatccat
gggcataatgttttgaaaataagtcatttgcttgcaaacctctgctccatacttaaaatc
actcctgaaatgatccaatctgatggcggccatctggcttcagccctggaaggctatgca
aacatcttccatccacattctaccaacactgaagacccaattgatggggatatcaaagtt
tggacagatgacacaagaaaagtgagcagtgaggatttggttttcatctggggattcagg
ggtaggatgtctgctggaggccttaagaggctgctccagggttctcactctgttttctct
gaagaattcgatgttcgaatggtggatggtagctgtgcaattgtagttttctggcagtct
ggtttgtctcaaacttttctagaagccatcagttccaatgggatttccggacttttaagg
gagatggtctcagaaggcctaagagcagcaggttatgagacttacaaaaaaacctgcagt
ctgggtttctgggaggcagatttagcagattccttggacaaggccttggcagaacctgat
cacaactcagaagctgattctgaaacaaagccaacaggcccctcacaaatttactggagt
agagactctatcataaacttggatgaactttga
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