Vitis riparia (riverbank grape): 117918085
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Entry
117918085 CDS
T07274
Name
(RefSeq) cell division control protein 48 homolog C isoform X1
KO
K14571
ribosome biogenesis ATPase
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117918085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117918085
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
117918085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
AAA_5
AAA_22
AAA_16
AAA_2
TIP49
AAA_14
Nucleolin_bd
RNA_helicase
nSTAND3
AAA_28
NPHP3_N
AAA_17
AAA_33
IstB_IS21
Bac_DnaA
AAA_18
NACHT
Mg_chelatase
Parvo_NS1
Viral_helicase1
ATPase_2
AAA_3
Rad17
ABC_tran
NB-ARC
AAA_11
TsaE
AAA_19
Cytidylate_kin2
Motif
Other DBs
NCBI-GeneID:
117918085
NCBI-ProteinID:
XP_034690503
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All DBs
Position
1:21303563..21314449
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AA seq
825 aa
AA seq
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MIGFDRVLVHRLQSCKDNYQTLDAIINHLCRKYPEYSRKKRQPFTRIVQQALESLQQPHR
STKKKKNEPLTSNLDDDNQEFSDSARTRKRPKKINESEERLVRRELEHYRRMQRDQERPS
TSSDSDSDSDSNSSSSSSCDSEDGAVSTSENADAIYEEKVEPECDLMKEMMRATYAKSAS
KNVESKNENPRLIEDKNIELEVGDKQKSKIGMVEGGGVGKGLGKGSKKEVKGSVSTGVEV
SGKDGPMFSDLGGMKIVVEELKMEVIVPLYYPELPRWLGVRPMAGILLHGPPGCGKTKLA
HAIANETKVPFYKISATEVVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKREN
LNREMERRIVTQLMTCMDESNRLVQPADGDKESEISDHKPGYVLVIGATNRPDAVDPALR
RPGRFDREIALGVPDESARADILSVITRNLRLEGTFDLAKLARSTPGFVGADLAALANKA
GNLAMKRIIDRRKFELSRELTDEEHIEDWWRQPWLPEEMEKLSITMADFEEAAKMVQPSS
RREGFSTIPNVRWEDVGGLDLLRQEFDRYIVRRIKYPEDYEEFGVDLETGFLLYGPPGCG
KTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT
TKRGKEGGWVVERLLNQLLIELDGADQRRGVFVIGATNRPEVMDRAVLRPGRFGKLLYVP
LPSPDERGLILKALARKKPIDASVDLIAIGQKEACNNLSGADLSALMNEAAMAALEEKLS
DCSSGVISWTINAKHFDQALGKISPSVSNKQKHFYQVLSESFKAE
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgataggattcgatcgggtccttgttcatcgtctccagtcttgcaaagacaactaccaa
accctagacgccatcatcaaccatctctgcaggaaatacccggagtacagtcgcaagaag
cgccagcctttcaccagaatcgtccaacaagccctagagtcattgcagcaaccccaccgc
agcaccaagaaaaagaagaacgaacccttgacctcaaatctcgatgatgacaaccaagag
ttcagtgacagcgcccgcactcgtaagaggcccaagaagattaatgagagcgaagagaga
ttggtccgtcgggaattggagcactaccggaggatgcagagggatcaggaacgtccatcc
acgtcttcagattcggattcggattcggattcgaattcgagttcgagttccagttgtgat
agcgaagatggcgcggtgtcgacgtccgaaaatgcagatgccatctatgaggagaaggtg
gagccggagtgtgatttgatgaaggagatgatgcgagcgacgtacgccaagtcggcttcg
aaaaatgtggagtccaaaaatgaaaatccgagactgattgaagacaagaatatcgaattg
gaggttggtgataagcagaagagtaagattggtatggtagaaggaggtggagttgggaag
ggattggggaagggctcgaagaaagaagtgaagggttctgtttcgaccggtgttgaggtg
agtggaaaggatgggccgatgtttagtgatcttggagggatgaaaatcgtggtggaggag
ttgaagatggaagtgattgttccgctgtattatccagaattgcctcgttggttgggagta
cgcccaatggcgggaattttgttgcacgggccgcctggttgtggaaagaccaagctggct
catgccattgctaatgagactaaagttccattttacaagatatcagcgactgaggtggtc
tctggtgtatcaggtgcatcagaagagaatattagggagcttttctcaaaagcatacagg
actgcaccatcaattgttttcattgatgaaattgatgcaattgcctcaaaaagagaaaac
ctaaatagggagatggagcgacggattgtgacacagttgatgacttgcatggatgaatcc
aacagacttgtacaacctgcagatggagataaagaatcagaaatctctgatcacaaacct
ggttatgttcttgtcataggagccactaataggcctgatgctgttgaccctgcactaagg
aggccagggcgttttgatcgtgagattgctttaggtgttccggatgaaagtgctagggct
gatattctttcagtaattacacgcaatcttagacttgagggtactttcgatcttgcaaaa
ttagctaggtccacaccagggtttgttggagctgatttggcagctctggccaacaaggct
ggtaaccttgccatgaagagaattatagacagaagaaagtttgagctgtctagagaacta
acagatgaagaacatattgaagattggtggaggcagccatggttgcctgaagagatggaa
aaacttagcattacaatggcagattttgaggaagcagctaaaatggttcagccctcttct
agaagagaaggattctctaccattccaaatgtaaggtgggaagatgttggagggcttgat
cttttaaggcaggaatttgaccgttacatagttaggcgtattaaataccctgaggattat
gaggaatttggtgtggatttagagacaggatttttgctttatgggcctcctggctgtggt
aaaacactaattgccaaggctgttgcaaatgaagcaggggccaatttcatacatattaag
ggccctgaacttctgaataaatatgttggagaaagtgagctggcagttaggacactattt
agtcgagcaaggacatgttctccatgcatactattttttgatgaggtggatgctttgaca
acaaagcgtgggaaggaagggggatgggttgttgagcggcttctaaaccagctattgata
gagttagatggtgcagatcagcggcggggtgtttttgttattggtgccacaaatagacct
gaggtgatggaccgtgccgtgttacggcctggtaggtttgggaaacttctttatgtgcct
ttgcctagtccggatgagcgtgggttgatcctaaaagctcttgctaggaagaagcctata
gatgccagtgtggatttgattgccataggacagaaagaggcttgtaacaatctaagtggg
gctgatctttctgcactgatgaatgaagcagccatggctgctctggaagagaaactctca
gattgcagttcaggtgtaatttcatggactataaatgcaaaacattttgaccaagcactt
gggaaaatctctccatctgtctcaaacaagcaaaaacacttctaccaggttttgtcagaa
agcttcaaagcagaatga
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