Vitis riparia (riverbank grape): 117918338
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Entry
117918338 CDS
T07274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117918338
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117918338
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117918338
Spliceosome [BR:
vri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117918338
Complex B
117918338
Complex C
U2 SnRNP specific factors
117918338
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117918338
NCBI-ProteinID:
XP_034690798
LinkDB
All DBs
Position
7:complement(26294706..26300700)
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AA seq
771 aa
AA seq
DB search
MSKRKFGFEGFGINRPATYNFERSQAPQRLYVPPSSRSGGHDNYEDHDLDNIDYDDKDEH
GEVAGGGGEVDDGEIDPLDAFMKGIHEEMRAPPPPKVVEKAEKYVDDDEDDPMESFLRAK
KDTGLALAADVMHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVLDKKKIEPIPALDHSS
IEYEPFNKDFYEEKDSISGMTEQDVTEYRKSLSIRVSGFDVPRPIKTFEDSGFSPQLMNA
ITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGP
IGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCEIVIATPGRL
IDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK
LAREILTDPVRVTVGEVGMANEDITQVVQVIPSDADKLPWLLDKLPGMIDDGDVLVFASK
KATVDEIESQLGQKGFKIAALHGDKDQASRMDILQKFKSGIYHVLIATDVAARGLDIKSI
KSVVNFDIARDMDAHVHRIGRTGRAGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPM
ELMDLAMKDGRFRSKRDARKGGGKKSKGKGGNGRGVRGVDFGLGIGYNPESNNPSSQTVP
SRAAAVNSLRTGMMAQFKSNFVAATSGSQNQGSNNSPSTYANKRPVLQGFVSGGSIGGDM
NRAQTTSSFSPAPTSAGKTSGQNSGENASHRNSENSRDRSRERRRPSGWDR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgaaaattcggattcgaaggtttcgggataaatcggccggcgacctacaac
ttcgagcggtcccaagctccgcagcgcctctacgtgcctccgtcgtctcgctccgggggc
catgacaactacgaggatcatgacctcgacaatatcgactacgatgacaaggatgagcac
ggggaggtggctggaggcggtggtgaggtggatgatggtgagatagacccacttgacgct
ttcatgaagggaatccacgaggaaatgagagctccgccgccgccgaaggtggtggagaag
gcggagaaatacgtggatgatgatgaggatgatccgatggaaagtttcttgagggcgaag
aaggatacggggttggcgttggctgcggatgtgatgcatgccgggtatgattcagacgag
gaggtttacgcggctgctaaggctgttgatgcggggttgatagagtatgattcagatgat
aatccgattgttttggataagaagaagattgagccgataccggctttggatcatagttcg
attgagtatgagcccttcaataaggacttctacgaggagaaagattcgatttcaggaatg
actgagcaggatgtcactgaatacaggaagagcttgtcgattcgtgtttcaggttttgat
gtgccaagaccaattaagacgtttgaagactctggtttctctccgcaattaatgaatgct
atcacgaaacaagggtatgaaaaacctacaccaatacagtgccaagcttttccaattgtg
ctttctggaagagatattattgggatagcaaaaactgggtctggaaaaactgcagctttc
gtgctgccaatgattgtccatattatggatcagcctgaactggccaaagaagaaggtcct
attggagtgatatgtgctccaactagggaattagctcatcaaatatatttggagtcgaag
aagtttgctaaaccatatggaattcgtgtatctgccatctatggtgggatgtccaaactt
gaacagttcaaagaactcaaatcaggatgtgagattgtaattgctactcctgggagattg
atagacatgataaaaatgaaggccctgacaatgttaagagcaacttacctagttcttgat
gaggctgataggatgtttgaccttggatttgagccacaaataaggtctatcgttggtcag
attcggccagaccgtcagactttactcttttcagcgacaatgccccgcaaagttgaaaag
ttagcaagagagattcttactgatcctgtaagagttaccgttggggaggtgggaatggcc
aatgaagatatcacacaagttgttcaagtgattccttctgatgctgataagttgccctgg
cttcttgataagctacctggaatgattgatgatggagatgttctagtttttgcttcaaag
aaagccacagtagacgaaattgaatcacaattgggccaaaaggggtttaaaattgcagct
ctccatggtgacaaagaccaggcttctcggatggacattctccaaaaatttaaatctggc
atctatcatgttcttattgcaactgatgtggctgctcgtggtctagacatcaagtcaatc
aaatcagtggtaaactttgatattgctagagacatggatgctcatgttcatcgtattggt
agaactggtcgtgctggtgataaagatgggactgcatacactctgattacacacaaggag
gcccggtttgctggagaattggttggaagtctgattgcagccggacagaatgtgcccatg
gaactaatggatcttgctatgaaggatgggagattcaggtccaaacgtgatgccagaaaa
ggaggtgggaaaaagtcaaaaggaaagggaggcaatggtcgaggtgttcgtggtgtggat
ttcggtttgggcatcggatataaccctgagtccaataacccttcatctcaaactgttcca
agtcgagctgctgcagttaattctttaagaacgggaatgatggcacaatttaaaagcaat
tttgttgctgctacatctggttcccaaaatcagggctccaataacagtccaagtacttat
gccaacaagagaccagttttgcagggttttgtttctggtggttcaataggtggagatatg
aatagagctcaaacaaccagttcattcagccctgctccaacgtcagcgggaaaaaccagt
ggtcagaactctggagaaaatgccagccacagaaactcggaaaactctagagatagatcc
agagaaaggcggaggccttccggttgggatcggtga
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