Vitis riparia (riverbank grape): 117918368
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Entry
117918368 CDS
T07274
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta-like isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117918368
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vri01009
]
117918368
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117918368
03036 Chromosome and associated proteins [BR:
vri03036
]
117918368
Protein phosphatases and associated proteins [BR:
vri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
117918368
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
117918368
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
117918368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_8
EF-hand_1
EF-hand_5
DUF4187
DUF929
Motif
Other DBs
NCBI-GeneID:
117918368
NCBI-ProteinID:
XP_034690851
LinkDB
All DBs
Position
7:complement(23762232..23781537)
Genome browser
AA seq
557 aa
AA seq
DB search
MDDREMVDAATLDPELLQLQEVSSFAVKASPQLADELFAQWLSLPDTGRLVKSLINDAKA
GASFNASVNCSSANSAANNPLPSLFPAGSAPPISPRSASSSPRVSKQRTSPSSLGSPLKL
VTEPVREPIPQFYFQNGRPPPKELKEQCLSRVNHIFDDHLDGLQINEEKSSSLGWNKCFF
FGDAEFKSVTKDICRLPSFFSSALFRKIDTDCIGIVTKDAFIKYWVDGNMLTADAATQIF
RILKQPDCKYLTQADFKPVLQDLLATHPGLEFLQSTPEFQERYAETVIYRIFYYINRSGN
GRLTLRELKRGNLIAAMQHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKEN
LIRYGNHALTYRIVDRIFSQVPRKFTSKIEGKMGYEDFVYFMLSEEDKSSEPGLEYWFKC
IDLDGNGVLTLNEMQFFYEEQLHRMECMAQEPVLFEDILCQIVDMIAPEREEYITLRDLK
GCKLSGNVFNILFNLNKFMAFETRDPFLIRQEREDPTLTEWDRFAHREYIRLSMEEDGED
VSNGSAEVWDESLEAPF
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagagagatggtggatgctgcgactttagaccctgaattgttacaactccaa
gaggtgtcgtcgtttgcggtgaaagcgagtccacaactggctgacgagttgtttgctcag
tggctttcgcttccggacactggacgactggtgaaatctttaattaatgatgcaaaagct
ggtgcttccttcaatgcttctgtgaactgttccagtgcaaattctgctgcaaataatcca
ttgccttccctgtttcctgctggcagtgctcctcccatttcaccaagaagcgcgtcctct
tctccacgtgtttcaaagcagagaaccagcccttcttcactaggctctccactaaaattg
gtcactgaaccagttcgagaacccatacctcagttttactttcaaaatggtcgtccacct
ccaaaagagctaaaagaacaatgtctttctagagtcaatcacatttttgatgaccatttg
gatggattgcaaataaatgaagaaaaatcttcttctcttggatggaataagtgttttttc
tttggtgatgcagaatttaaatcggtcacaaaggacatatgcagactaccatcatttttc
tcctcggctcttttcagaaagattgataccgattgcattggaatagtgacaaaggatgca
ttcatcaaatattgggttgatggcaatatgctcactgcagatgctgcaacacaaatattt
agaattctaaagcaaccagattgcaaataccttactcaggccgactttaaacctgttctg
caagatcttttggctacccatcctggtttggaattcttacaaagcacacctgaatttcag
gaaagatatgctgaaactgtcatatacagaatattttactacatcaatagatcaggaaat
ggtcgtcttactctcagggagctgaaacgtggaaatttaattgctgcaatgcaacatgca
gatgaggaagaggatattaacaaagttctgaggtacttttcttatgaacacttctatgtt
atatactgcaagttctgggagctggacacagatcatgatttcttgattgacaaagagaat
ctcatcagatatggtaatcatgctcttacctacaggatcgttgatagaatattttcacag
gttccaagaaagtttactagcaagattgaggggaagatgggttatgaagattttgtttac
ttcatgctgtcagaggaggataagtcatcagagcctggtcttgaatattggttcaagtgc
atagatttggatggaaatggagtgcttacactgaatgaaatgcagttcttttacgaggag
cagttgcatcgaatggaatgcatggcccaagagcctgtactatttgaggatatcttatgt
cagatagttgacatgattgcaccagagagggaagaatatatcaccctacgtgacttgaag
ggatgcaaactttctggaaatgttttcaatattcttttcaatcttaataagttcatggct
tttgaaactcgtgatccatttctaatacgccaggaacgagaggatccaactttgacagag
tgggaccgctttgcacatagagaatacattaggctttcaatggaagaagatggtgaagat
gtctcaaatggaagtgcagaagtttgggatgaatcacttgaagctccattttga
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