Vitis riparia (riverbank grape): 117918464
Help
Entry
117918464 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: probable E3 ubiquitin ligase SUD1
KO
K10661
E3 ubiquitin-protein ligase MARCH6 [EC:
2.3.2.27
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117918464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117918464
Enzymes [BR:
vri01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117918464
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
March proteins
117918464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MARCHF6_C
RINGv
zf-RING_2
zf-ANAPC11
Motif
Other DBs
NCBI-GeneID:
117918464
NCBI-ProteinID:
XP_034691039
LinkDB
All DBs
Position
7:4382681..4393863
Genome browser
AA seq
1035 aa
AA seq
DB search
MEIAGPPLASDSEDRNEEDEDVCRICRNSGDSDNPLYYPCACRGSIKFVHEDCLLQWLDR
SKNRRCEVCRHMFLFSPIYAEDAPARLPLREFLTVITLKCXDVLQIFLHSAFSFSVYFLL
ISFGTYWIWQLAFVRSLSEAQKLFSSHISTKTIAINCFHGYLLSGIIKFVFHGFTFLRDF
FIHLWDLRRQNLEGENGGRDGVHAARRPPDNADRDFVGGGEGIAGAGQIGRRNAENVAAW
LEVLAAQLEDHVGRMFGRPNGVGIIEFFPFDMLVRIRVPVFRLLENSFSVLFRNTIFLIV
VIFIPLSLGRVFSLHLLWLFSSATIPAISSVIPPTQTHALANNALGADANSSLESRRDDM
QNQVTAVVAGMLKEDSTGLEDVSNIISKTLSANLFKGEIIRTSHLSNEMTLAIGYMFILL
FFLFCLGPLFLIHYSRGQRLNWGRLFHIAYIAEAVLSIIRKFCAVLRHFMTMAKVAFILV
IKFGFFPLICGCWLDICTLRVFGKTIVQRVAFFLEDPAASSFYHWIAGILYMLQFSFSMN
LLQGVLHNGVLNFLQNLADPIYILFHSLVEDPVHKHAGNILLAVGIHGSLVVMLFFLPVR
LAVLFVPSLFPLDLSLSDPLTTRFLFHICIPWATRYFKLRATVKTLLCQWFTVVGRELDL
TDVLLPRPEGNGMEENADVVPEQQQGQHDRQLHEEVGQQNRDLGALASAEDSNLGIWASG
NSDVEEKNGDEQADSDRYHFFLRILLLLVLAWITLLLSNLVLIVVPISLGRALFNAIPLL
PLTRGIKFPLFSVTLDIKFNDIYAFILGNCIIRTVITGSRYVVQHVQTGRAGVLLKQIWK
WCGIALKSSALLSIWIFVIPVLIGLLFELVVVTPIRVPLDESPVFILYEDWLLGLIFLKF
WTSLVLLDDEELFVDRSWRVKFERVLNDGFSQLQGLWVMSEIIIPIMMKLLTALCVPYMF
SRGLFPMLGYPLLVNSAVHRFAWVGCLASIFMCSCAKRIHALFIRMHNAIWNERYLIGQR
LHNFKEVSGRDAKQG
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgccggaccgccgctggcttccgatagtgaagatagaaatgaggaggacgag
gacgtgtgccgaatttgtcgaaactctggggactctgataaccctctctattacccgtgt
gcttgtcgtggcagtatcaaatttgttcacgaagattgcctccttcagtggcttgaccgt
agtaaaaatcgccgttgtgaggtctgcaggcatatgtttttgttctcccccatttatgcc
gaggatgcaccagcaaggcttcctctcagagagttcttaactgtgatcacattaaagtgt
nttgatgtgctgcaaatctttctacacagtgccttctcattttctgtttatttcctgcta
atttcgtttggtacatattggatatggcaattagcttttgtgaggagtttaagtgaagcc
caaaaattattctcaagtcatatatctactaaaacgattgctatcaattgttttcatggc
tatctactttctggcatcattaaatttgtctttcatgggttcacatttttgagagatttc
tttattcatctgtgggacctaagaagacagaaccttgagggagaaaatgggggcagagat
ggtgttcatgctgccagaaggcctcctgacaatgctgatagagattttgttggtggaggt
gaaggcattgctggggctggtcaaataggtagaagaaatgcagaaaatgtagctgcctgg
ttggaggtgctggcagctcaacttgaagatcatgttggacggatgtttggtagaccgaat
ggtgttggaattatagaattttttccgtttgatatgcttgtacgcatacgggtccctgtg
tttcgtttacttgaaaattcattttctgttcttttcaggaacacaattttccttattgtt
gtaatttttatccccctttccttgggacgagttttctctctgcatctattatggctcttc
tcctctgctacaattcctgctatatcatcagtcattccaccaactcaaactcatgcctta
gcaaataatgcattaggcgctgatgcaaattcatcgttggaaagtcgtagagatgacatg
caaaaccaggtaacagcggtggttgcggggatgttgaaagaagactcaactggactggaa
gatgtctcaaatataattagcaaaacactttcagcaaacctgtttaaaggagaaattatc
agaacatctcacttgtctaatgagatgactcttgccataggttacatgtttatactattg
ttcttcttgttttgccttgggccacttttcttgattcattattctcgaggtcagcgattg
aactgggggaggttatttcatattgcttatatagcagaggcagtcctgtccattataaga
aaattctgtgcagtcttaaggcattttatgactatggctaaggttgctttcattctggtg
attaagtttgggtttttccctttgatatgtggctgttggttggatatttgcaccttaagg
gtgtttgggaagacaattgttcagagggttgcattctttttagaggatcctgcagcaagc
tccttctatcattggatcgctggaattctctacatgctacaattcagtttttcgatgaat
cttcttcaaggggtcttgcataatggagtcttgaactttcttcaaaatctagcagatccc
atttacattttgttccacagtttggttgaagacccagtgcacaagcatgctggcaacatt
cttttggctgttggtattcatggtagcttggttgtgatgctgttctttttacctgtcaga
ttagccgtgctgtttgtaccttctttatttccacttgatctttctttgtcagatccactt
acaaccaggtttctgtttcatatctgcatcccatgggctactcgctattttaagctgcga
gcaacggttaaaacccttctgtgccagtggtttactgttgttggccgggaacttgattta
actgatgtcttactgcctagacctgagggcaatggcatggaggaaaatgcggatgtagtg
ccagagcagcagcaaggacaacatgatagacaactacatgaagaagttgggcaacaaaat
agggatctaggtgcacttgcaagtgctgaagattcaaatttaggcatatgggcatctggg
aactctgatgttgaagaaaagaatggtgatgaacaagctgattctgacaggtaccacttt
tttctacgcattttgctgttattggtgctggcatggataactctgcttctatctaacttg
gtcttgattgttgtaccaatttcacttggacgtgcgctctttaatgctatccctcttctc
ccactaactcgtggcatcaagttccctctcttctcagtaactcttgacatcaagtttaat
gatatatatgcattcattcttggaaattgcattatacggactgtcataactggatccagg
tatgttgtacaacatgtccaaacaggaagagctggggttcttttaaaacaaatttggaag
tggtgtggcattgccctcaaaagttctgcacttttgtcaatatggatctttgtcatcccg
gtattgatcggtctgctgtttgagcttgtggtggttacaccaatacgggtgccgttggat
gaaagcccagtgtttatcttatatgaggactggttattgggactcatttttctcaagttc
tggactagtctggtactgctagatgatgaggagctctttgtggacaggagttggcgagta
aagtttgagagggtgctaaacgatggtttctcccagttgcaaggcctctgggtgatgtcg
gaaattataattccgatcatgatgaagctgctgacagctctctgtgttccttacatgttt
tccagagggttattccccatgcttgggtatccattattggtcaattcagctgtccaccgt
tttgcctgggtgggctgccttgcctctattttcatgtgctcttgtgctaaaagaatccat
gccttgttcattaggatgcataatgccatttggaatgagcgttatctgattggccagaga
ctgcataactttaaagaagtttctggaagagatgcaaagcaaggctaa
DBGET
integrated database retrieval system
