KEGG   Vitis riparia (riverbank grape): 117918468
Entry
117918468         CDS       T07274                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03018  RNA degradation
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117918468
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117918468
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117918468
   03041 Spliceosome [BR:vri03041]
    117918468
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117918468
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     117918468
Spliceosome [BR:vri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    117918468
 Complex C
  U2 snRNP components
    117918468
SSDB
Motif
Pfam: LSM SM-ATX DUF150_C DUF1256
Other DBs
NCBI-GeneID: 117918468
NCBI-ProteinID: XP_034691046
LinkDB
Position
7:28620360..28626187
AA seq 93 aa
MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPEGVDIELLHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgttgttcttctcgtacttcaaggacttggtgggtagagaagtgactgtggagctcaag
aatgacctggcaataagagggactcttcactctgttgatcagtatctcaatatcaagctt
gagaacactagagtcgttgaccaagacaagtaccctcacatgctatcggtgaggaattgt
ttcataagaggatcagtggtgagatatgttcaactgcctccagagggagtcgacatcgag
ctgttgcatgacgccaccaggagggaagctcgaggtggctaa

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