Vitis riparia (riverbank grape): 117918472
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Entry
117918472 CDS
T07274
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117918472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117918472
Spliceosome [BR:
vri03041
]
Complex C
Other components
Step II factors
117918472
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
PAN2_N
Motif
Other DBs
NCBI-GeneID:
117918472
NCBI-ProteinID:
XP_034691057
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Position
1:9739022..9744132
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AA seq
584 aa
AA seq
DB search
MDLLAKSYTADDDDGRQHEAEDQNLDNSSPDSSPTRIALPSKSSAPKVDDTTLALAIANT
NDKPIDPIQHVVPFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVENAAIEPFIFD
EQYNTFHKYGYAADPSASAGNNYVGDLEALEKNDGISVYNIPQHEQKKRKIEKKKESESE
ENEDVDAEEVQNPATDTWLLKNKKSPWAGKKEGLQTELTEEQKKYAEEYAKKKGEEKGAA
EKGEFVTDKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIR
FFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKN
IKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYD
QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW
LAAQSLDNQILIYSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFW
DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcttgccaagagttacacggcagatgacgacgacgggcgacagcatgaagca
gaagaccaaaaccttgacaattcatcgccggattcttccccaactcgaatcgctctcccc
tccaaatcatccgcccccaaggtcgacgacaccacgctcgctctcgcgatcgccaataca
aatgacaaacccattgaccctatccaacacgtcgtccccttcaatcccacctacgaccag
ctctgggctcccatctatggccccgcccacccatacgccaaagacggcatcgctcaaggc
atgcgcaaccacaagctagggttcgtggaaaacgccgctatcgagcctttcattttcgac
gaacaatataacacgtttcacaagtacggttacgccgcggacccgtctgcttcggcgggg
aataattatgttggggatctggaggcgttggagaaaaacgacggtatttcagtgtataat
attcctcagcacgagcaaaagaagcggaagattgagaaaaagaaggaatcggagagcgag
gagaatgaggatgttgatgcggaggaggttcagaatcccgctactgatacgtggttgttg
aaaaataagaagagtccgtgggcggggaagaaggaagggttgcagacggaattgacggag
gaacagaagaagtacgccgaggagtacgcaaagaagaagggtgaggagaaaggggcagcc
gaaaagggcgaatttgttacagataagagtacatttcatgggaaagaggagagggattat
cagggtaggtcttggattgcaccacccaaggatgctaaggctacaaacgatcattgttat
ataccaaagagattggtgcatacttggagtggacacacgaagggtgtgtctgcaattcgg
ttcttccccaagcatgggcatttgattctctcagctgggatggataccaaggtaaagatt
tgggatgtgttcaattcagggaagtgtatgaggacttatatgggtcactcaaaggcagtt
cgagatatttcgttttgtaatgatgggactaagtttttgactgctgggtatgacaagaat
atcaagtactgggacacagaaactggacaggtgatatccaccttctcaactgggaagatc
ccttatgttgttaagctgaatccagatgatgataagcagaatatcctattagcagggatg
agtgataaaaagattgttcagtgggatatgaatacagggcaaattacacaagagtatgat
caacatttgggagcggtaaacaccattacatttgtagacaacaataggagattcgtcact
tctagtgatgacaaatctcttcgtgtttgggaatttgggattcctgtggtaataaagtat
atcagtgaacctcatatgcactccatgccatcaatttctcttcacccaaatacaaattgg
cttgcggcacagagtttggacaatcagattcttatttatagcactagggagaggtttcag
ctcaataaaaagaagaggtttgctggtcacattgcggctggctatgcttgccaagtcaat
ttctcaccagatggacggtttgtcatgtctggagatggtgaaggtaaatgctggttttgg
gactggaagagttgcaaagtcttcagaacactcaagtgtcatgaaggggtatgcatcggg
tgtgagtggcatcctttggaacaaagtaaagtagcaacatgtggctgggatggcttgatt
aagtactgggactaa
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