Vitis riparia (riverbank grape): 117918592
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Entry
117918592 CDS
T07274
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117918592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117918592
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117918592
Spliceosome [BR:
vri03041
]
Complex C
Other components
Step II factors
117918592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
IBR
DEAD
OB_NTP_bind
AAA_22
AAA_19
IBR_1
HA2_N
ABC_tran
AAA_29
T2SSE
Arc_MA
AAA_30
Motif
Other DBs
NCBI-GeneID:
117918592
NCBI-ProteinID:
XP_034691237
LinkDB
All DBs
Position
7:complement(7210470..7250667)
Genome browser
AA seq
1742 aa
AA seq
DB search
MRGVGPATYRRQGPPANPRRGFSPGNTRSVRPQFEERSDEFPSNCRQNLRPEVAPPFRPS
PPNFIIELRPGLGGFKKIDVDELLATCKLMPEKVTVLSSGPIAATLFFRQWVDTLETMVY
LWELRLEGKHLFTPKLIRNIIMPSDEDELRSRLQTTFGNHIRAILEGEEVKKWQNELQHL
SDEIAKVQGLLRKPNKIAAHEKLTSEKNGLLCERDLISKRLKEFKSSMSCILNYLEGKHS
QQCYDEEIEVFRFNGDFDWSRIYHLIRRECRRLKDGLPLYAFRREILHQIHTQQIMVLIG
ETGSGKSTQLVQFLVDSGIAANDSIICTQPRKIAAVSLAQRVREESSGCYEDNSIICYPT
YSSARQFLSKVIYMTDHCLLQHYMNDKNLSGISCIIVDEAHERSLNTDLLLALIKALLSQ
KLDMRVIIMSATADADQLSKYFFGCGTFHVVGRNFPVDVRYAPCASEGTSGSATIASYVL
DVMRMANEIHKTEKEGTILAFLTSQMEVEWACEKFQAPSAVALALHGKLSYEEQFRVFQS
YPGKRKVIFSTNLAETSLTIPGVKYVIDSGMVKESRFEPGTGMNVLRVCSISQSSANQRA
GRAGRTEPGRCYRLYSKDDFELMPPHQEPEIRRVHLGVAVLRILALGIKNLEHFDFVDAP
SGQAIDMAIRNLLQLGAVTLTNDFYDLTEEGRCLVKLGIEPRLGKLILNCFHHRLGREGL
VLAAVMANASSIFCRVGNDEDKLKSDRLKVQFCHRDGDLFTLLSVYKEWECLPAEKRNKW
CWENSINAKSMRRCQDTVHELDRCLKNELRIIIPTYWRWNPHNPTMQDRYLKKVILSSLS
ENVAMYSGYDQLGYEVALTGQYVQLHPACSLLIFGEKPSWVVFGEILSISNQYLVCVTAF
DIDSLPTIFPPLFDVSKMESRKLQTRKMTGFGSTLLKKFCGKANNNLIHLISQIRTSCMD
VRISIEVKVDQNEILLFASSKDMEKVGSLVNDVLEYERKWLQNECIEKCLYHERHGVAPP
LALFGAGAEIKHLELEKRCLSVDVFCSDANTTDDKELLMYLEEHASGSICSFHKFTGTGQ
DSEERWGRITFLTPDSAKKATDLNKVEFRGSLLKVIPSRTTFGGNHKMFPFPAVKAKVYW
PRRQSKGFGIVKCDRHDVDFMVNDFSNLLIGGRYLRCEGSAKYMDSVVISGLDKELSEAE
ILDELRTATNRRILDFFLVRGDAVKNPSCGACEEALLREISPFMSKTKPHGNCCQAQVFP
PEPKDSFMKALITFDGRLHLEAAKALEEIEGKVLSGCLSWQKIKCQQLFHSYVSCPAPVY
SVIKKQLVSLLASLKHQKGAECNLDRNENGSYRVKISANATKTVAEMRRPLEQLMKGEIV
DHASLTPAVLHLLFSRDGIMLMKSLQRETETYILFDRHSISVRVFGPSEKIAVAKQKLVE
SLLALHDSKQLEIHLRGGDLPGDLMKEVVKKFGPDLHGLKEKVPGAEFTLNTRRHIIYIH
GNKELKQKVQDIVYEIAQKSGSSDERPDDEAACPICLCEVEDGYCLEACAHKFCRLCLVE
QCESAIKSQDSFPVCCTHEGCRTPIWLTDLKSLLSSDKLEELFRASLGAFVASSGGAYKF
CPSPDCPSVYRVASSSMTSEPFVCGACFVETCTRCHSEYHPYISCERYQEFKEDPDLSLK
EWCKGKEHVKSCPICGYIIEKVDGCNHVECRCGRHICWGCLEFFESSDDCYSHLRSVHQA
II
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atgaggggagttggtccggctacttatcggcggcaaggaccgccggcgaacccacggaga
ggcttctccccggggaatacacggtcggtacggcctcagttcgaagaaagaagtgatgag
ttcccatcgaattgtaggcagaatctgcgtccagaagttgcgcctccgttccggccaagt
cctccgaacttcatcatcgagcttcggcctgggcttgggggttttaagaagatcgacgta
gatgaattactcgccacatgtaaattgatgcctgagaaggttaccgttctatcatcaggt
cctattgcagcaaccttgtttttccgtcaatgggtggatacgcttgaaacaatggtatat
ttgtgggaattacgtctggaaggcaaacatcttttcactccgaagttgatacggaacatt
attatgccatctgatgaagacgagcttcggagtcggctccaaaccacattcgggaatcat
attagggcaattcttgaaggcgaagaagtcaagaagtggcagaacgagctgcagcatctc
tctgatgagattgcaaaagttcagggcctgcttaggaagcctaataaaatcgctgctcat
gaaaagcttaccagcgagaagaatgggttgctttgtgagagggatttgatttcaaagagg
ttgaaggaattcaaatcttctatgagttgcatactcaattatcttgaagggaagcattct
cagcaatgctatgacgaggagattgaggtgtttaggtttaatggtgattttgattggagt
agaatttatcacttgattagaagagaatgtcgcaggcttaaggatggtttgccactgtat
gccttccggcgggagattcttcatcaaattcacacccaacagataatggtattgattgga
gagactggttcaggaaagagtacacagttggttcaatttctagttgactcaggtatagct
gctaatgattccattatatgtacccagccccgcaagattgcggccgtctcactagcacaa
agggttagggaggaaagtagtgggtgttatgaagataattcaataatctgttatccaaca
tattcttctgctcggcagtttctttccaaggtaatatatatgacagatcactgtttattg
caacactacatgaatgataagaacctgtctgggatctcatgtatcattgttgatgaggct
catgagagaagtttgaatactgatcttcttttggctttgattaaagctttactttctcag
aaacttgatatgagggttatcataatgtccgcgacagcggatgcagaccagctttcaaag
tactttttcggttgtggaaccttccatgtggtggggagaaacttcccagttgatgtcaga
tatgccccttgtgcttctgaaggaacttctggttctgccactattgcttcctatgtttta
gatgttatgaggatggcaaacgagatccataaaacagagaaagaggggacaattcttgcc
tttttgacctctcagatggaggtggaatgggcatgtgagaagtttcaggctccttctgca
gttgcattagctttacatggaaaactttcctatgaggagcagttccgtgttttccagagc
taccctgggaaaagaaaagttatattttccacaaatctggctgagacatcattgacaatt
ccaggggtcaagtatgttattgattctggcatggttaaagagagtaggtttgagcctggc
actggcatgaatgtccttagagtttgcagcatcagccagagttctgcaaatcaacgggct
ggcagggctgggagaacagaaccgggaaggtgttacagactctattcaaaggatgatttt
gagttgatgcctcctcatcaggaacctgagattcgtagagtccatcttggggttgcggtt
ctaaggattcttgctttaggaatcaagaatttagaacattttgattttgttgatgcacct
agtggtcaagctattgacatggccatcaggaatcttcttcagttaggtgctgttacatta
acaaatgatttttatgatttgactgaggaaggccgatgcttagttaagttgggtattgag
cctcggctcggcaaactaattctcaattgttttcatcatcgcttgggtagagagggtctt
gttcttgctgctgttatggccaatgccagtagcatcttttgtagagttggtaatgatgaa
gacaagctaaaatctgatcgcctcaaggtgcaattttgccatcgtgatggtgacctcttc
actctgctttctgtttacaaggaatgggagtgtctacctgcagagaaaagaaataaatgg
tgttgggagaacagcatcaatgccaaatccatgcgaagatgccaagacactgtgcatgaa
ttggacaggtgccttaaaaatgaacttagaatcattattcctacttactggcgttggaat
cctcacaaccctaccatgcaagataggtatttaaaaaaggttatactgtcctccctttca
gaaaatgtagccatgtattctgggtatgatcaacttggttatgaagtggcattaactgga
caatatgttcagttacatccagcatgttcattactaatatttggtgagaagcctagctgg
gtagtttttggtgaaattctgtcaatatctaatcagtatttggtttgtgtaactgccttt
gatattgactctttgcctaccatcttccctcctttgtttgatgtttctaagatggagagc
cggaagctgcaaacgaggaagatgactggttttggcagcactctcctgaaaaaattttgt
ggaaaggccaacaataacttgattcatcttatatcacaaattcggacgtcctgtatggat
gtccgtattagtattgaagtcaaggttgatcagaatgagattctgttatttgcctcttca
aaggatatggaaaaggttggtagtcttgtaaatgatgtgttagaatatgaacgaaaatgg
ttgcagaatgaatgcatagagaaatgcctatatcatgaaagacatggtgtagcgcctcct
ctggcactctttggagctggtgctgaaatcaaacatctggagcttgaaaagagatgttta
tctgttgatgtattttgttcagatgcaaacacaactgatgataaggagcttttgatgtat
cttgaagagcatgcctctggcagtatttgttctttccacaagttcacaggcactggacaa
gatagtgaggaaagatggggcaggataacatttcttactccagattctgctaaaaaggct
actgacttaaataaagttgaattcagaggctccttgctgaaggtaattccttctcgcaca
acctttggaggcaatcacaaaatgtttccgtttcctgctgttaaagcaaaagtttattgg
cctcgtagacaaagtaaagggtttggaatcgtgaaatgtgatagacatgatgttgatttc
atggtcaatgatttctctaacctgctgataggaggaaggtatcttcggtgtgagggcagt
gcaaagtacatggattctgttgtgataagtgggcttgataaagaactttctgaagctgaa
attttagatgagttgaggactgctactaataggagaatcttggatttttttctggtgaga
ggagatgcagtaaagaatccttcatgtggtgcttgtgaagaagctcttcttagagaaatc
tctcctttcatgtctaagacaaaaccccatggcaattgttgccaagcccaggtctttcct
cctgaaccaaaggactctttcatgaaagcattgatcacatttgatggaagactacatttg
gaggcagcaaaagctttggaggaaatagaaggcaaagtattgtctggttgtctttcatgg
cagaagatcaagtgccagcagttgtttcatagctatgtatcctgtcctgcacctgtatat
tctgtcattaagaagcagctggtttctttacttgcaagcttaaagcatcaaaagggggca
gaatgcaatctagacaggaatgagaatggttcctatcgtgtgaagatatctgcaaatgct
actaaaactgtggctgagatgagaagacctctggaacagcttatgaagggggaaattgta
gaccatgccagcctcactccagccgttctacaccttctgttctccagagatggcattatg
ctcatgaaatcacttcagcgagagacagaaacctacattctctttgacaggcatagtatt
agcgtaagggtttttggtccttcagaaaagattgctgtggcgaaacagaaattagttgag
tcccttctagccctacatgacagcaagcaacttgaaatccatctccgaggtggagatctg
cctggtgacttgatgaaggaagtggttaagaaatttgggccagacctccatgggctcaaa
gagaaggtacctggggctgagtttactctgaatacccgccgtcatatcatctacattcat
ggtaacaaagagttgaagcaaaaagtacaagacatagtttatgagattgcacagaagagt
ggtagttcggatgaaaggcctgatgatgaagctgcctgccccatttgcttgtgtgaagta
gaggatggttattgtctcgaagcctgtgcacataaattctgcaggttgtgcttggtagag
caatgcgagtcagccatcaaaagccaggacagtttccctgtatgctgtacccatgaaggt
tgcaggactcctatttggcttacagacctgaaatctctattgtcaagtgataaattggag
gagctttttagggcttctttaggggcatttgttgcatctagtggtggtgcttacaagttt
tgtccatcacctgactgtccttcagtttatcgagtggcaagttcttcaatgactagcgaa
ccatttgtctgtggggcatgttttgtagagacatgtactaggtgtcactccgagtatcat
ccatatatatcatgtgagaggtatcaggaattcaaggaggatcctgacttgtcgctgaag
gagtggtgcaaggggaaagagcacgtaaagagctgccctatttgtgggtacatcatagag
aaagtggatggatgcaaccatgttgagtgtaggtgtggcaggcatatttgctggggatgt
ttggagttctttgagagcagtgatgactgctacagccatttgaggtctgtacaccaggcc
atcatatga
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integrated database retrieval system
