Vitis riparia (riverbank grape): 117919605
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Entry
117919605 CDS
T07274
Name
(RefSeq) pre-mRNA-splicing factor prp12 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117919605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117919605
03041 Spliceosome [BR:
vri03041
]
117919605
03036 Chromosome and associated proteins [BR:
vri03036
]
117919605
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117919605
Spliceosome [BR:
vri03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
117919605
Complex B
117919605
Complex C
U2 SnRNP specific factors
117919605
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
117919605
TFTC complex
117919605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
117919605
NCBI-ProteinID:
XP_034692691
LinkDB
All DBs
Position
8:complement(20988891..21011222)
Genome browser
AA seq
1404 aa
AA seq
DB search
MAFAEEECSSTKSRSASNNDSHYLAKCVLKGSVVLHVVHGRIRSPSFSDIVFGKETSLEL
VIIGEDGIVQSVCEQAVFGTIKDLAVLRWNERFHHQNLQMQGRDLLVVVSDSGKLSFLRF
CNEMHRFFPVTHVQLSSPGNLRNQLGQMLAIDSNGCFIATSAYEDRLAMFSISMATDSDI
IDKRIFYPPEIEGDSGVARSVHRTSISGTIWSMCFISKDLNQPSGGYNPVLAIILNRRGA
VLTELVLLEWIIIENAVRVISQYAEAGHLAHSIVEVPHSYGFAFLFRIGDALLMDLRDAH
NPCCVYKTSLNILPTSVEQNFAEESCRVHDGDEDGIFNVAASALLELKDYVAKGDDPMNV
DGDSGMVKSTSKHVCALSWEPGNETNSRMIFCVDTGELFMIEISFDSDGPKVNLSDCLYR
GLSCKALLWFAGGFLAALVEMGDGMVLKLEQGRLVYRSPIQNIAPILDMSVVDCHDEEHD
QMFACCGVTPEGSLRIIRSGISVEKLLRTAPIYQGITGTWTVKMKVIDSYHSFLVLSFVE
ETRVLSVGLSFTDVTDSVGFQPDVSTLACGVVDDGLLVQIHKNGVKLCLPTTVAHPEGIP
LASPICTSWFPENISISLGAVGYNLIVVATSSPCFLFILGVRSVSAYQYEIYEMQHVRLQ
NEVSCISIPHKHFDKKPSTFLSNLVDNSSAAALLIGVNIGRIFVIGTHKPSVEILSFLPD
EGLRILASGAISLTNTLGTAVSGCVPQDARLVLVDRFYVLSGLRNGMLLRFELPAASMVF
SSELSSHSPSVSSCSVNDADTNLSNMMAPNSIGPQMCAINLSEETNINSPVNLQLIAIRR
IGITPVFLVPLSDSLEADIIALSDRPWLLQSARHSLSYTSISFQPSTHVTPVCSMECPMG
ILFVAENSLHLVEMVHSKRLNVQKFYLGGTPRKVLYHSESRLLLVMRTELSQDTYSSDIC
CVDPLSGSVLSSFKLELGETGKSMELVRVVNEQVLVIGTSLSSGPAMMPSGEAESTKGRL
IVLCLEHMQNSDSGSMTFCSKAGSSSQRTSPFREIVGYAAEQLSGSSLCSSPDDTSCDGV
RLEESEAWQLRLAYTATWPGMVLAICPYLDRYFLASAGNSIFVFFCQFYVCGFPNDNPQR
VRRFAVGRTRFMIMSLTAHFTRIAVGDCRDGVVFYSYHEDSRKLEQLYCDPEQRLVADCI
LMDVDTAVVSDRKGSIAVLSCSNHLEDNASPECNLTLNCSYYMGEIAMSIKKGSFSYKLP
ADDVLKGCDGSNTIIDFSENSIMAGTLLGSIIMLIPISREEHELLEAVQARLAVHQLTAP
ILGNDHNEFRSRENSVRKAGVSKILDGDMLAQFLELTSMQQEAVLALPLGSLETVTSSSK
QTLLSPISVNRVVQLLERVHYALN
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgctgaggaagaatgttcatctaccaagtctcgatcagcctctaacaatgac
tcccactatctagccaagtgcgttctcaaaggaagtgtcgttctccatgtcgttcacggc
cgcatccgctctccttccttcagcgacatcgttttcggcaaggagacatccctagagttg
gtaataattggtgaagatgggattgtacaatctgtttgtgagcaagctgtatttggcaca
attaaagatcttgctgttctacgctggaatgagaggttccaccatcaaaatctacagatg
caaggtagagatcttttggtcgttgtttctgattctgggaagctttcatttctcagattt
tgcaacgaaatgcacaggtttttcccagtgacacatgttcagctttccagtccaggaaac
ttgaggaaccagcttggacaaatgctggctattgattccaacggctgttttattgccact
agtgcatatgaagatcgattggccatgttctccatttcaatggctaccgacagtgatatc
attgataagagaatattctatcctcctgaaatagaaggggactcaggcgtagctagaagt
gtccacagaaccagtatatctggtaccatatggagcatgtgctttatttcaaaagatctt
aatcaacccagtggtgggtacaaccctgtgctagcaattattctaaataggaggggggcg
gttttgactgagctggttttattggaatggattattattgaaaatgctgttcgtgttatt
tctcagtatgctgaagctggacatttagctcatagcattgttgaagttcctcattcatat
ggatttgcctttctgttcaggattggtgatgctcttctgatggatcttagggatgctcac
aacccttgttgtgtctataagacaagcttaaatattttacccacttcagttgagcagaat
tttgctgaagagtcatgtcgagtacatgatggtgatgaagatggcatctttaatgttgct
gccagtgccttgctagagctgaaggattatgttgctaaaggtgatgatcctatgaatgta
gatggtgacagtggcatggtaaaatcaacctccaaacatgtctgtgcattgagttgggaa
ccaggaaatgaaacaaattcgaggatgatattttgtgtagatacaggagaactttttatg
attgaaatttcttttgactctgatggccctaaagttaatctatctgattgtctttataga
ggtctatcctgcaaggcacttttgtggtttgcaggcggatttcttgctgcacttgtagag
atgggggatgggatggtcctgaaattggaacagggaaggctggtttacagaagtcctatt
caaaacattgctccaatcctggatatgtctgttgtagattgccatgatgaggaacatgat
caaatgtttgcctgctgtggagtgacaccagagggatcattaaggatcatacggagtggc
atcagtgtggaaaagctattgaggactgccccaatttatcaaggcataactggcacttgg
actgttaaaatgaaagttattgattcttatcattcttttcttgtgctgtcatttgttgaa
gagactagggtattatcagttggtttaagttttactgatgtgactgattcagttggattt
cagcctgatgtctctactttggcgtgtggtgttgtggatgatggtttgctggtccagatc
cacaaaaatggggttaaactctgtttgcccacaacggttgcacatcctgaaggcattcca
ttggcttctccaatttgtacatcttggtttccagaaaatataagcatcagtcttggggca
gttggatataatttaattgttgtcgcaacttcgagtccatgcttcttatttattcttggg
gtcagatcagtatcagcatatcaatatgaaatatatgagatgcagcatgtgagattgcaa
aatgaagtatcctgcatttccatacctcataaacattttgataaaaaaccgtcaactttt
ctcagtaatttagttgataatagcagtgcagctgccctactgattggggtaaatattggt
cgaatctttgtcattggcactcataagccttcagtggagattttgtcattcctacctgat
gaaggccttagaattcttgcttctggggccatttcattaacaaatacattgggaactgct
gttagtggttgtgtccctcaggacgccagacttgttctagttgatcgattttacgttctt
tcaggtttgagaaatggaatgcttcttcggtttgagttgcctgctgcctctatggtgttc
tcatcagaattatccagtcacagcccatctgtgagttcctgttcggtaaatgatgctgat
actaatttatcaaatatgatggcgccaaattctattggcccacaaatgtgtgctattaat
ttatcagaagagacaaatatcaacagtcctgttaatctgcaattaattgcgatccgtcgt
attggcattactcctgttttcctggttcctctgagtgattcacttgaggctgatattatt
gctctcagtgataggccttggttattgcagagtgcgaggcacagcctctcatatacttcc
atctcatttcaaccttcaacccatgtaactcccgtatgttccatggaatgccctatggga
atattatttgttgcggagaatagtctacatttggtggagatggtgcatagtaagaggctt
aatgtgcagaaattttatcttggaggcactccaaggaaggttttatatcatagtgaaagc
aggttattgcttgtgatgaggaccgaattgagtcaagatacatattcatccgatatttgt
tgtgttgatcctcttagtggatccgtgctttcatcttttaaacttgaacttggggaaact
ggaaaatccatggagttggtaagggttgtaaacgaacaggttttggtgattggaaccagt
ctgtcttctggtccagctatgatgcccagtggtgaagctgaaagtacgaagggccgtcta
attgtcctctgccttgaacacatgcaaaattcagatagtggttcaatgacattttgttca
aaggcagggtcatcttcccagcgaacatcaccatttcgtgaaattgttggatacgctgct
gaacagttatcaggcagtagcctttgcagcagtcctgatgatactagttgtgatggagtc
aggcttgaagaaagtgaagcatggcagctgcgattggcttacacagccacatggcctggg
atggtacttgctatctgtccttatcttgaccgttactttttggcatctgctggtaactcg
atatttgtattcttctgtcagttttatgtatgtggttttccaaatgataaccctcaaaga
gtgagaaggtttgctgttggaaggacacgcttcatgataatgtctttgactgcacatttt
actagaattgctgttggcgattgccgtgatggtgttgttttctattcctatcatgaggat
tccaggaaacttgagcagctttactgtgacccagagcagagattggttgctgattgtatt
ctcatggatgttgatactgctgttgtttcagatcgcaaagggagcattgctgtcctgtca
tgttcaaaccatttagaagataatgcaagtccagaatgcaatttaacattgaattgttca
tactatatgggggagatagccatgagcatcaagaaggggtcattttcatataagctgcca
gcagatgatgttttgaagggttgtgatggttctaatacaattatcgacttttcggagaac
agtattatggccggtacacttttaggaagcataataatgcttattcctatatcgagggaa
gaacatgagctcttagaagctgtacaagctagacttgcggttcaccaactgactgctcct
attcttggaaatgatcataatgagtttcgaagccgtgaaaactcagtgagaaaggctgga
gtatctaagatactggatggcgacatgcttgctcagttcttggagctcacaagtatgcaa
caagaggctgttttagcattacctcttggatcactagagacagttacatcaagttcaaag
cagactttgctttctccaatctctgtcaatcgtgttgtgcaactacttgagcgagttcat
tatgcgttgaattga
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integrated database retrieval system
