Vitis riparia (riverbank grape): 117919638
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Entry
117919638 CDS
T07274
Name
(RefSeq) ribosomal RNA small subunit methyltransferase nep-1-like
KO
K14568
rRNA small subunit pseudouridine methyltransferase Nep1 [EC:
2.1.1.260
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117919638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117919638
Enzymes [BR:
vri01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.260 rRNA small subunit pseudouridine methyltransferase Nep1
117919638
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
90S particles
Other 90S particles
117919638
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EMG1
SPP1_portal
Motif
Other DBs
NCBI-GeneID:
117919638
NCBI-ProteinID:
XP_034692737
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All DBs
Position
8:complement(19463604..19468234)
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AA seq
271 aa
AA seq
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MVQPYAIKGHKRKRREENYDKEEVEQLLEEETAATATQDENKAEEITHELPGIPLVPFKS
NNKTGVTFILERACLEVAKVGKSYQLLSSEDHANFLRKNNKNPADYRPDILHQALLTILD
SPLNKAGRLRAVYVRTEKGVLFEVKPHVRIPRTYKRFSGIMLQLLQKLSITAVGKREKLL
RVIKNPVTQYLPVNSRKIGFSYSSEKSTPIWDYVAAVSDDVDLVFVVGAMAHGKISNDYT
DDFIAISGYPLSAAWCTYLICGALMQKWNIF
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atggtacagccttatgccataaaagggcacaagcgaaagagaagggaagagaactatgat
aaagaggaagtagaacaattgttagaagaggagacagcagcaacagccacacaggatgag
aataaggcagaagaaatcacacatgaacttcctggtatcccacttgtcccattcaaatcg
aacaacaagactggggttacgttcattcttgagagggcttgtttagaagttgcaaaagtt
ggaaagagttaccagctactgagctcagaggatcatgcaaatttcctgaggaaaaataac
aaaaaccctgctgattacaggcctgacattcttcatcaggctctcctaactattttagac
agcccacttaataaggctgggaggctacgagctgtgtatgtaagaaccgagaaaggtgtg
ctttttgaagttaagccacatgttcgcattccaaggacatacaagcggttctctgggatc
atgttgcagctgctacagaaactgagtattactgctgttggtaagcgggagaagctttta
cgtgtcatcaagaacccagttactcaatatttacctgtcaactctcgaaaaataggtttc
tcatatagttcagaaaagtcaactccaatatgggactatgtggctgctgttagcgatgat
gtggaccttgtttttgtggttggtgcaatggcccatgggaaaattagtaatgattataca
gatgatttcatagcaatttctggctatccattgagtgctgcatggtgtacttatttgatc
tgtggggccttgatgcagaagtggaatatattttag
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