Vitis riparia (riverbank grape): 117919760
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Entry
117919760 CDS
T07274
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117919760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vri03009
]
117919760
Ribosome biogenesis [BR:
vri03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117919760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WDR55
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
PEP5_VPS11_N
NBCH_WD40
Beta-prop_LRRK2
Beta-prop_Vps41
Beta-prop_EIPR1
WDCP
WD40_like
TMEM70
VPS8_N
Beta-prop_IP5PC_F
Beta-prop_SCAP
Motif
Other DBs
NCBI-GeneID:
117919760
NCBI-ProteinID:
XP_034692899
LinkDB
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Position
8:complement(14994131..15009493)
Genome browser
AA seq
459 aa
AA seq
DB search
MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAWQIYNCAKLNLVLVGPQLPKKIR
ALASYRDYTFAAYGNDIAVFKRAHQVATWSRHNAKVNLLLLFGEQILSIDVGGNMFMWAF
KGIQQNLAPIGHVMLEDKFSPSCIMHPDTYLNKVILGSEEGSLQLWNISTKQKLYEFKGW
KSSICCCVSSPALDVVAVGCADGTIHIHNIRYDEEIVTFSHSTRGAVTALSFSTDGRPLV
ASGGSSGVISIWNLEKRRLQSVIREAHDSSIISLHFFANEPVLMSSSADNSIKMWIFDTS
DGDPRLLRFRSGHSAPPLCISFYANGRHVLSAGQDRAFRLFSVIQDQQSRELSQRHVTKR
AKKLRVKEEEIKLKPVIAFDFGTILLYEHFFHALMDSFELGKMKNVENSNFKLVISNVLI
IFLVIAFCFFLGVVILASVHIATYKYVSAISLDSFILCF
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgggaattttcgaaccctttagagcaataggatacatcacaagcacggttcctttctct
gttcagagattgggcactgaaactttcgtcaccgtcagtgtcggcaaagcttggcagatt
tataactgtgctaagctcaatttggtgcttgttggtcctcaactgccaaaaaagattcga
gctcttgcttcttatcgtgactacacatttgctgcatatgggaatgatattgcagtattt
aagcgtgcgcatcaggtggcaacttggagtaggcataatgccaaggtcaatttgttgcta
ctatttggagagcaaatcctcagcattgatgttggtggtaatatgttcatgtgggcattt
aaaggtatccaacagaatcttgctccaatcggacatgttatgctagaagacaagttcagc
ccaagctgtataatgcatccagatacttacctaaacaaggtgattcttgggagcgaggaa
ggctctctgcaactttggaacattagcacaaaacaaaagctgtatgagttcaaaggctgg
aaatcatctatatgttgttgtgtttcgtcacctgcactagatgttgttgcagtcggctgc
gctgatggaactattcacattcacaacattcgatatgatgaggagatagttacatttagt
cactctacacgaggtgctgtgaccgccttgtcttttagcactgatggacgacctcttgta
gcatctggaggttcatctggtgttataagcatatggaatctagagaaaagaaggctccaa
tcggttataagagaggctcacgatagttcaataatttctctacatttctttgccaatgag
ccagtgctgatgagttcatctgcagacaactccataaaaatgtggatttttgacacaagt
gatggggatcctcgtcttcttcgcttcagaagtgggcacagtgctcctccactttgcata
agtttctatgccaatgggaggcacgttctatctgctggtcaagatcgcgcttttcgtctt
ttctctgtcatccaggaccaacaaagtagagagctttctcaacgtcatgtaactaaaaga
gctaagaaactcagggtgaaggaggaagagataaagttgaagcctgttattgcatttgat
tttggtacaatccttctctacgagcatttttttcatgcattaatggattcatttgaactc
ggaaaaatgaaaaatgttgaaaatagcaatttcaaactagttatatcaaatgtcctcata
atttttttagtaattgctttttgttttttcttgggggttgttattttggcttctgttcat
attgcaacctacaaatatgtctcagccatttcactggactcttttatcttatgcttctga
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