Vitis riparia (riverbank grape): 117920157
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Entry
117920157 CDS
T07274
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117920157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117920157
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117920157
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117920157
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
TMA17_helical
Motif
Other DBs
NCBI-GeneID:
117920157
NCBI-ProteinID:
XP_034693418
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All DBs
Position
8:complement(21250597..21266162)
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AA seq
897 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALLDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNTVVGELECQVDNFEAEIEGLSVKKGKTRPPRLTHLETSIARHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFSDVDELYNSLPLDKVES
LEDLVTIGAPGLVKGAPALSLKNSLTPTQIPATVTSPLQQSTSIPEQSEETASQDSNSEI
GPRTPPAKNSVIGSSASSTPTGSHATPIPLTVSAHNLSASPAPTILPSSTSVRGVLENAG
TAISSPVNVSSSAKEEEIASFPGRRSSPALVETGLVRGIGRGVPSSQPSTSVPLSSGITI
PSNGGLGAVPSASDMSKRSTLGADERLGGGGMVQPLVSPLSNRMILPQTAKTNDGTGLAD
SSSVGEAAVIAGRVFSPSVVPGMQWRPGSSFQNQNESGQFRGRTEITLDQKEKFLQRLQQ
VQQQTQSTILGMPPLSGGNHKQFSAQQQNPLLQQFNSQSSSVSPQVGLGLGVQAPSLNTV
TSAAIQQQPGSIHQQSNQQALLSTGPKDADVGHVKAEDQQQQQNVSDDSTMESAPSSLGK
NLMNEDDLKASYAMDTSAGVSGSLTEPSQVPRDTDLSPGQPVQSNQPSGSLGVIGRRSIS
DLGAIGDTLSGSAVNSGGMHDQLYNLQMLEAAFYKLPQPKDSERARNYTPRHPAVTPPSY
PQVQAPIVNNPAFWERLGLDTFGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNT
WFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcgaaaactacaaggcgagattgacagggttctgaagaaggttcaggaa
ggcgtggatgttttcgatagtatctggaacaaggtttacgacacggataatgccaatcag
aaggagaagtttgaggctgatttgaagaaggagatcaagaaacttcagcggtatagagac
cagatcaagacatggattcagtccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgctggatgctcggaagcttatcgagcgtgaaatggaaagatttaagata
tgtgaaaaagaaactaagacgaaagcattctccaaagaagggctgggccaacaacctaaa
actgacccaaaggagaaggctaaatcagagacaagggactggttgaacactgtggtgggg
gagttggagtgtcaagttgataactttgaagccgaaattgaagggctatctgttaaaaaa
ggaaagacaaggccacctagactgacacatttggagacatctattgctcgacacaaggct
catataatgaagttagaactgattttgaggctactggataatgatgaattgagtcctgag
caggtcaatgatgtaaaagacttcttggatgattatgtggaacgtaatcaggaggacttt
gaagaatttagtgatgtagatgagctgtacaactctttgccattagacaaggtggaatca
cttgaagatctggttacaattggtgctccaggccttgttaagggtgcaccagctctaagc
ttgaagaattctttgacaccaacccaaataccggccacagtcacatctcctcttcaacag
agtacttccatcccggaacaatccgaggagacagcttcacaggacagcaattctgagatt
ggtccaagaactccacctgccaaaaatagtgtaattggttcttctgcttcatcaacacca
acggggagccatgcaactcctatacctttgactgtttcagctcataatttgtctgcatca
cctgctccgacaattcttcccagttctacttctgttcgaggtgtcctggaaaatgcaggt
actgctatttcatctcctgttaatgtgtctagttctgcaaaggaagaagagattgcaagc
ttcccaggcaggagatcttcacctgctcttgttgaaactggactagtgaggggcattggc
agaggtgttccatccagccaaccatcaacaagtgtcccacttagttctggcattacaatt
ccaagcaatggaggccttggtgcagttccttcagccagtgacatgtcaaagagaagtact
ttaggtgctgatgagagacttgggggtggtggtatggtgcagcctttggtttccccactg
agtaatagaatgatcttgccacaaactgccaagactaatgatggaactggcttggctgat
tctagtagtgttggagaggctgcagtcatagctggcagagtcttctctccttctgtagtt
cctggcatgcaatggaggccaggaagttcctttcagaatcaaaatgaatcgggacagttt
cggggaagaactgaaattactcttgatcagaaggagaaatttttgcagcgtctccagcaa
gtgcagcaacaaactcagagtaccattcttggtatgccccctctttctggaggaaatcat
aagcagttctctgcacaacagcaaaacccactcttgcagcagtttaattctcaaagctca
tctgtctcacctcaagttggtctgggacttggagtccaggcacctagtctcaacactgtt
acatctgccgccatacagcaacagccaggttccatccaccaacagtctaatcagcaagct
ttgttatctactggtccaaaagatgctgatgttggccatgtcaaagctgaggaccagcag
caacaacaaaatgtatctgatgactcgacaatggaatctgctcctagttctcttggaaag
aatctcatgaatgaggatgatttgaaagcttcatatgcaatggacacatctgcaggagta
tctggctctttgacagagccttcccaagtgccaagagatactgatctctctcctgggcaa
cctgtacaatctaaccaaccttctggcagccttggtgttattggtcgaagaagcatatct
gaccttggtgcaataggtgataccctcagtggatcagctgtgaattctggggggatgcat
gatcagctttacaatctacagatgcttgaggctgctttttacaagcttcctcaacctaaa
gactcggaacgtgcaaggaactatactccaaggcaccctgcagtgacccctccaagctat
cctcaagtacaggcacccattgtcaataatcctgccttctgggaacggctgggtcttgat
acttttggcactgacaccctgttctttgcattttactatcagcagaatacttatcagcaa
tatttggctgcaaaagaactaaagaagcaatcgtggagataccacaggaaatataacaca
tggtttcagaggcatgaggagccaaaagttgccactgatgaatttgaacaggggacatat
gtgtactttgatttccatattgctaatgatgacctacaacatggatggtgccagaggatc
aagactgaattcacttttgaatacaactatcttgaagatgaacttattgtatag
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