Vitis riparia (riverbank grape): 117920184
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Entry
117920184 CDS
T07274
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117920184
03036 Chromosome and associated proteins [BR:
vri03036
]
117920184
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117920184
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
117920184
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
SPT6_acidic
YqgF
Spt6_S1
HTH_44
HHH_9
Tex_N
HHH_3
SH2
Motif
Other DBs
NCBI-GeneID:
117920184
NCBI-ProteinID:
XP_034693460
LinkDB
All DBs
Position
8:complement(11627073..11639984)
Genome browser
AA seq
1658 aa
AA seq
DB search
MAGKTVVSDDEEDVEVEDNEGEPLDEEDRRRDDDDEDEEDDEGQDEYEKDGFIVDDVDEE
EQDEEEERADSDEERQKKKKRKKRESEKNFVLDEDDYELLEDNNITGFHRPKMESKRFKR
LKKAQRDTRGEGSGFSDEEEFDGSGKSGRTAEEKLKRSLFGDDEAPIDDIAEEEQFEEDG
DIGEDDEMADFIVEEEEVDEHGAPVRRRKPNKKKSRQAPGVSSSALQEAHEIFGDVDELL
QLRKQGLDSGEWRERRLEDEFEPIILSEKYMTEKDDRMREIDIPERMQILEESTGSPPTD
EISIEEECNWIFNQLATGMVPLLRSKGTSEAGHDLSINKDDIMRFLDLVHVQKLDVPFIA
MYRKEECLSLLKDPDQLEADDGNLDNPEKTPKLKWHKVLWAIQDLDRKWLLLQKRKSALQ
SYYNRRFEEESRRIYDETRLSLNQQLFESIIKSLKAAESEREVDDADSKFNLHFPPGEVG
VDEGQYKRPKRKSQYSICSKAGLWEVANKFGYSSEQFGLQISLEKMRMDELEDAKETPEE
MASNFTCAMFETPQAVLKGARHMAAVEISCEPCVRKHVRSIYMDNAVVSTSPTSDGNVVI
DAFHQFAGVKWLREKPVTKFEDAQWLLIQKAEEEKLLQVTIKLPEHVLNKLISDSNDYYL
SDGVSKSAQLWNEQRKLILQDAIFGFLLPSMEKEARSLLTSRSKNWLLLEYGKVLWNKVS
VAPYQRKENDVSSDDEAALRVMACCWGPGKPATSFVMLDSSGEVLDVLYTGSLTLRSQNV
NDQQRKKNDQQRVLKFMTDHQPHVVVLGAVNLSCNKLKDDIYEIIFKMVEENPRDVGHEM
DGISVVYGDESLPHLYENTRISSDQLPGQSGIVKRAVALGRYLQNPLAMVSTLCGPGREI
LSWKLCSLEDFITPDEKYGMIEQVMVDATNQVGLDINLAASHEWLFSPLQFISGLGPRKA
ASLQRSLVRAGTISTRRDFVVLHGLGKKVFLNAAGFLRVRRSGLAAASSQIIDLLDDTRI
HPESYGLAQELAKDVYRADVEDDANDDDDDALEMAIEHVRDRPNRLKALDVDQYAKDKKL
ENKRETLYAIKMELIQGFQDWRRQYEEPTQDEEFYMVTGETEDTLAEGRIVQATIRKVQA
QRAICMLESGLTGMLAKEDYSDDWRDISDLSDSMHEGDILTCKIKTIQKNRFQVFLVCKE
SEMRSNRYQNAPNLDPYYREDRSSLQSEQEKARKEKELAKKHFKPRMIVHPRFQNITADE
AMEFLSDKDPGESIIRPSSRGPSFLTLTLKVYDGVYAHKDIVEGGKEHKDITSLLRIGKT
LKIGEDTFEDLDEVMDRYVDPLVTHLKAMLSYRKFRRGTKAEVDEQLRIEKSEYPMRIVY
CFGISHEHPGTFILTYIRSSNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPLH
ESAPSIRSVAAMVPMRSPATGGSSGASVGSGWGGSANSSEGGWRGQSSDRDRSSTPGSRT
GRNDYRNGGGRDGHPSGLPRPYGGRGRGRGSYGSNRGYGANNERQDSGYGTPKWDSGSKD
GEDGWNSFPGAKVQNSPGKESFPGSWGAGGSGSGTGGSNWGGGGGGGGGSDSAGWGRGSS
GGGGGGSWNGAGANDAGTETGNSGWGSGPKRSVAGTSW
NT seq
4977 nt
NT seq
+upstream
nt +downstream
nt
atggctggaaaaactgtggtctcggacgatgaagaggatgttgaggttgaagataacgag
ggagagccccttgacgaagaagaccgccgtcgcgatgacgatgacgaggacgaagaggat
gacgaagggcaggatgaatatgagaaggatggatttatagtagatgatgttgatgaagaa
gaacaggatgaagaagaagaaagagcagacagtgacgaggagaggcagaagaagaaaaaa
agaaagaaaagagagtcggagaagaattttgttctggatgaagatgactatgagcttctt
gaggataataacattacaggctttcatcgcccaaaaatggagagcaaaaggttcaagcgg
ctgaaaaaagctcaaagggacactaggggggagggctctggtttttctgatgaggaggag
tttgatggaagtgggaagagtggaaggactgctgaggagaagcttaagcggagcttattt
ggtgatgatgaagcaccaattgatgatattgctgaagaggaacaatttgaagaggatggg
gacattggtgaagatgatgaaatggcagacttcatagtggaagaggaagaagttgatgag
catggtgctccagtgagaaggagaaaacctaacaaaaagaagtctaggcaagcaccagga
gtttcatcatctgccttgcaggaagcacatgaaatatttggtgatgttgatgaactcctg
cagctccgcaaacaagggttagattctggagagtggagggaaagaaggcttgaagatgaa
tttgaaccaattattctttctgaaaaatatatgacagagaaggatgatcggatgcgggag
attgatattccggaaagaatgcagatattagaggaaagcactggatctcctccaactgat
gaaatcagtatagaagaagagtgcaattggatttttaatcagcttgcaactggtatggtt
cctttgttgagaagcaaagggacatctgaagcaggtcacgatctgtcaataaacaaggat
gacattatgagattcttggacttggtccacgtgcaaaaattagatgtcccttttattgca
atgtaccgaaaggaggagtgcctaagcctattgaaagacccagatcaactggaagcagat
gatgggaatctagataaccctgagaaaacacctaagctaaagtggcacaaggtactttgg
gctattcaggacttggacagaaagtggctgcttcttcagaagcgaaagagtgctctacag
tcatattacaatagacgttttgaagaagaatctaggagaatatatgatgaaacaaggctc
tctttgaaccagcaactttttgaatcaattattaagtcactcaaggctgcagaatcagaa
agagaggtcgatgatgctgactcaaagtttaatttgcattttcctcctggtgaggttggt
gttgatgaaggacaatataagagacctaaaagaaagtcacaatatagcatctgcagtaag
gctggcctatgggaggttgcaaacaagtttggctatagctctgaacaatttggattgcag
atatctttagaaaagatgagaatggatgagctggaagatgccaaagaaacaccagaggag
atggcttcaaatttcacatgtgcgatgtttgagacacctcaggctgtgctcaaaggggct
aggcacatggcagccgttgagatcagttgtgagccatgtgtcaggaaacatgttcgcagc
atctatatggataatgctgttgtatcgacaagtccaacatctgatgggaatgtggttata
gatgctttccatcagtttgcaggggttaagtggttacgtgaaaagccagtgaccaaattt
gaggatgcacagtggctcctaatccaaaaggctgaggaggagaagcttctccaagttact
attaagttgccagaacatgtgctaaacaagttaataagtgattctaatgattattatctc
agtgatggtgttagtaaatctgctcaactatggaatgagcagaggaagctgattctgcag
gatgcaatttttggttttctcttgccttcaatggagaaggaggctagatccttgttgacc
agtagatcaaaaaactggttacttttggaatatggaaaggttttgtggaacaaagtctct
gtggctccatatcagcggaaggaaaatgatgttagctcagatgatgaagctgcattgagg
gtcatggcttgctgttggggccctggaaagccagccacctcttttgtgatgttggattca
tcaggagaagtgctggatgtgttgtatactgggtcccttactcttaggtctcaaaatgtt
aatgatcagcaacgtaagaaaaatgatcagcaacgtgttctgaaattcatgacagaccat
caaccgcatgttgttgtcctaggagccgtaaatttgtcttgtaacaagctgaaggacgat
atttacgagatcatttttaagatggtggaggaaaatcctagggatgttggccatgagatg
gatgggataagtgttgtatatggagatgaatctctccctcatctttatgagaatacacgt
atatcatctgaccaactacctggacagtcaggcattgtcaagcgggctgtggctcttggg
cgttatcttcaaaatccattagcaatggtttccacactgtgtggaccagggagggaaata
ttgtcttggaaactttgttctctagaggactttatcactcctgatgagaagtatggaatg
attgaacaggttatggttgatgccaccaaccaggtgggtcttgacatcaatttggctgca
agccatgaatggttgttttctcctttacaatttatttctgggcttggacccagaaaggca
gcatctttgcaaaggtctcttgtaagagctggaacaatttccactcgaagagactttgtg
gtcttgcatggacttggtaaaaaggtgtttctaaatgcagctggatttctgcgtgtgcgg
cggagtggattggctgctgctagcagccaaatcattgacttgttggatgatacaagaatt
catccagaatcctatggtcttgctcaggagttggctaaagatgtttatagagcagatgtt
gaagatgatgcaaatgatgatgatgatgatgcattagagatggcaatagagcatgttaga
gacagacctaatagattgaaagcacttgatgttgatcagtatgctaaggataagaagctt
gagaataaaagagagactttatatgctatcaaaatggaactaatacaaggatttcaggat
tggcgtagacagtatgaagaaccaactcaagatgaggaattttatatggttactggagaa
actgaggatacccttgctgaaggaagaattgttcaagcaacaattcgcaaagtgcaggct
caaagggcaatttgtatgcttgaatctggattaactgggatgctggcaaaggaagattat
tcagatgattggagggatatttctgatttgagtgatagcatgcatgaaggtgacatactc
acatgcaagattaaaacgatccaaaagaataggtttcaggtgttcctagtttgcaaagaa
agtgagatgaggagtaaccgatatcagaatgctccaaaccttgatccctattaccgtgaa
gatcggagcagtttgcagagtgagcaagaaaaggctcgcaaagaaaaggagcttgcaaaa
aaacatttcaagccaaggatgattgttcatccccgattccaaaatattacagctgatgaa
gcaatggagttcctatcggacaaggatccaggcgaaagtatcatccgtcctagttcccgt
gggccttcttttctgacattaactcttaaagtttatgatggagtttatgcgcacaaagat
atagtcgaaggtggaaaggaacacaaggacattacaagcttgcttcgcattgggaaaacc
ttgaaaataggagaggatacctttgaggatttggacgaggtaatggatcgatatgttgat
ccattagtgactcacttaaaggcaatgctaagttatcgcaagttcaggaggggaacaaag
gcagaagttgatgagcaattgaggattgagaaatcagagtatcctatgaggatagtttat
tgttttggcatttctcatgaacatccgggcacattcatcctgacttatattcggagttca
aatcctcaccatgagtatgtaggtctatatccgaagggattcaagttcaggaaaaggatg
tttgaggacatcgatcggcttgtggcatactttcagagacatattgatgatcccctgcat
gaatctgctccttcaatccgatctgttgctgctatggttcctatgcgaagccctgcaact
gggggttcttctggagcatctgtaggcagtggctggggtggctcagcaaacagcagtgaa
ggtggctggaggggacagtcttcagacagagatagatcttccacaccaggttccagaaca
ggccgaaatgactacagaaatggtggtggtcgggatggacatccaagtggactgcctagg
ccatatggtgggcgaggacggggacgaggttcatatggcagcaacagaggctatggtgca
aacaatgagaggcaggattcggggtatggtactcccaaatgggattcaggatccaaggat
ggggaggatggttggaacagttttccaggtgctaaagtccaaaactcacctggcaaagaa
tctttccccggcagttggggagcaggtggaagtggaagtggaactggtggtagcaattgg
ggtggcggtggcggtggcggtggtggcagcgacagtgctggatggggccgaggaagcagt
ggtggagggggagggggaagttggaatggtgcgggtgcaaatgatgctgggactgagacc
ggaaattctggatggggtagtggacctaagagaagcgtggcaggcacaagctggtaa
DBGET
integrated database retrieval system
