Vitis riparia (riverbank grape): 117920530
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Entry
117920530 CDS
T07274
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117920530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vri03036
]
117920530
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
117920530
SWR1 complex
117920530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
HDA2-3
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
117920530
NCBI-ProteinID:
XP_034694018
LinkDB
All DBs
Position
8:20354062..20382587
Genome browser
AA seq
2049 aa
AA seq
DB search
MASKGPRSKLDHETRARRQKALEAPREPRRPKTHWDHVLDEMVWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGEKRVKEEEQRLRKVALTISKDVKKFWIKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLADTYQPTQQYLPKERCSIQYKEVDDPGFKEV
PQSGIADVDEDYDMQSEEELEDDEHTIEEDEALITEEERQEELEALHNEIDLPLEELLKR
YAMKKVSSGSSQDKDEEEAEPTSVGDDHFGGEGQDLSDTCKIDKNNSLTVIGRRCGESNG
SLSISEHHLLEVDTCQAKNVSEISRESDEESKVYDFNDEQEDGDFVLATGEEKDDETTLL
EEEELAKEESNDPIDEIALLQKESEIPLEELLARYKKDADEDVEDDSDYASASEDFLDSP
AHQDTELNQQPGCVEDDDDEPGGRQPFVQSVTEEHAEGSEKQSDEARESENRIADAAAAA
RSAQPTGNTFSTTKVRTKFPFLLKHSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTI
MTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKFKRQG
WLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRI
LLTGTPLQNDLMELWSLMHFLMPHIFQSHQEFKDWFCNPISGMVEGQEKVNKEVIDRLHN
VLRPFLLRRLKRDVEKQLPMKFEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMI
SVIMQLRKVCNHPDLFEGRPIVSSFDMGGIDIQLSSSVCSMLSPGPFSTVDLRDLGFLFT
HLDFSMASWESDEVQAIATPTSLIKGRADPDNLAEIGFGFKHQRKSQGTNIFEEIRKAIL
EVRLTEAKERAASIAWWNSLRCCKKPMYSTTLRDLVTVKHPVHDIHRQKSDRLSYMYSSK
LADIVLSPVELFKRMIGQVECFMFAIPAARAPTPVCWCSKTNHSVFLQPTYKEKCTETLS
PLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAVLLRKLKSEGHRALIFTQMTKMLDVL
EAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIF
YDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGG
YNTEFFKKLDPMELFSGHRALPNKNMQKEKNHNIGIEGSVSVADVEAALKYAEDEADYMA
LKKVEQEEAVENQEFTEDAIGRVEDDELVNEDDMKPDEAVEQVGCTTSSKDSGLMLIGSD
PNEERALTFAGKEDDVDMLADVKQMAAAAAAAGQAISSFESQLRPIDRYAIRFLELWDPI
IDKAAMESQATFEEAEWELDRIEKFKEDMEAEIDNDEEPFVYERWDSDFATEAYRQQVEA
LAQHQLMEELECEAKEKDDADDENYGSTRNEMASDPKPKSKKKPKKAKFKSLKKGSLASD
SKAVKEEPLMEPMSIDDEDVFHGMVTFSDMMSSHSSMQKKRKKAEATADGEEDRIMKKRS
KKFKKAPEIGPLSFETNLSNKQHDESKESNPCESAVVDLELKSASRGKMGGKISITVMPV
KRILMIKPEKLKKGNIWSRDCVPSPDFWFPQEDAVLCAVVHEYGPHWSLVSETLYGMTAG
GFYRGRYRHPVHCCERFRELVQRYVLSAPENPNNEKVSNTGSGKALLKVTEDNIRMLLDV
AIDLPDSELLLQKHFTALLTSVWRMTSRVHHRQNHLPYRNGQYSTGRFFSSTVNQISWNS
VREPTERTNWNNFGYSSSRLVAAALHDANNKQHDDSAFLSNRREEVSTVPEQLEIRLEIE
RDFCDSMIPLPSVINLSILGSEPPSAVNNPIEESQILKSSQDMAENRFRAASRACFDGTL
DWASSAFPTSDIKPRSAIKSHSLGKHKLCTSDSIRPSKSKFKKVAVEPSEMHHLIWSPLP
KPTFAFNDSNPRFDLGSPVSLDAGISTPSFNEELCWEPESLELFSHHYSPNLFSDLDDFS
LLPEYIDIG
NT seq
6150 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaggaccaaggtctaagcttgatcatgagacaagagctaggcgccaaaag
gcacttgaggctcctagggagccccgtcgtcctaaaacacactgggatcatgttttagat
gagatggtttggctctcaaaggactttgagtcggagaggaaatggaaattggctcaggca
aagaaggtcgctttaagagctagcaagggcatgttggatcaagccacaaggggagaaaag
agagttaaggaagaagaacaacgtttgcgaaaggttgcacttaccatttcaaaggatgta
aagaagttctggatcaaaatagagaagctggtgctttacaaacatcaaatggagctcgat
gagaaaaagaaaaaggcacttgataaacagcttgagttccttttggggcaaactgagagg
tactcaacaatgttggcagagaaccttgcggatacgtaccaaccaacccaacagtattta
cccaaggaacgatgtagtattcaatataaagaagtggacgaccctggatttaaagaagta
cctcagtcaggtattgctgatgttgatgaagattatgatatgcagtctgaagaggaattg
gaagatgatgagcatactatcgaggaagatgaggccctcattactgaagaggaaaggcaa
gaagaattggaagcactgcacaatgagatagatctaccgcttgaggagctgctcaaacgt
tatgcaatgaagaaagttagcagtggtagtagtcaagacaaggatgaagaggaagcagaa
ccaacttcagtgggggatgatcattttgggggtgaaggacaggatctgtctgatacttgt
aagattgataaaaacaactcactcacagtcatcggtcgtcgttgtggtgaaagtaatggt
agcttatccatttcagagcaccatttgttagaagttgatacatgtcaagccaagaatgtg
tcagaaatttctagggagtcagatgaagaaagtaaagtatatgattttaatgatgaacag
gaggatggtgactttgttcttgcaactggagaagaaaaggatgatgagacaaccttgctg
gaggaggaggaacttgcaaaagaagaatcaaatgatcccatagatgagatcgctttactg
cagaaggagagtgaaattcctctagaagaacttctggcaaggtataaaaaggacgctgat
gaagatgtagaggatgattctgattatgcctctgcgtcagaggacttcttggattctcca
gcacatcaggacactgaattgaaccagcagcctggttgtgtggaagacgatgatgacgaa
cctgggggaagacagccatttgtgcagtctgtgacagaagaacatgcagaaggttctgaa
aaacaatctgatgaagcaagggagagtgagaatcgaattgctgatgcagctgctgctgca
agatcagcacaacccactggaaataccttctcaacaaccaaagtccgtacaaagttccca
tttcttctcaagcactctcttcgtgagtatcaacatattggcttggattggcttgttaca
atgtatgagaagagacttaatgggatactggctgatgaaatggggcttgggaagacaatt
atgacaattgctttgcttgcacacctagcgtgtgaaaagggaatatgggggcctcatctc
attgtggtgccgactagtgtcatgctgaactgggaaactgagtttcttaagtggtgtcct
gcttttaaaattcttacttactttggaagtgccaaagagcggaaatttaagagacaaggt
tggttaaaaccaaactctttccatgtctgcataaccacttacagacttgttatacaagat
tcaaaagttttcaagcggaagaagtggaaatatttgattctggatgaagcccatctgatt
aaaaattggaagtcccaaagatggcaaactcttttaaacttcaattcaaaacggcgcatc
ttattgactggtacaccactgcagaatgatctcatggaactctggtctctaatgcatttc
ttgatgccccacatctttcaatctcatcaagaattcaaagattggttctgtaatccaata
tctggaatggtagaggggcaagaaaaagtaaacaaagaagtcattgaccgtctccataat
gtccttcgtcctttcctactccgtcgattgaaaagggatgtggagaagcagctccccatg
aaatttgaacatgtcatatactgtaggctctctaagaggcagcgtaacttgtatgaagac
ttcattgccagttcagagacacaagctactctagcgagtgccaacttctttgggatgatt
agtgtcataatgcaactgcgcaaagtttgcaatcatcctgatttatttgagggccgtcca
attgtaagttcttttgatatgggcggtattgacatccaattgagttcttctgtttgttca
atgctttcacctggcccattttctactgtagaccttagggatttggggttcttatttact
catctcgatttcagcatggcttcttgggagagcgatgaagttcaggctattgctacacca
acgagcttaatcaaggggcgtgctgaccctgataatcttgcagagattggttttggattc
aaacatcagagaaaatcccagggaacaaatatttttgaagagatcagaaaggcaattttg
gaggtgagactgacagaagcaaaggaacgggcagcatctattgcatggtggaattccttg
aggtgttgtaagaaacccatgtactcaacaaccctacgggatcttgtcacagtaaagcat
cctgttcatgatatccatcgtcaaaagagtgaccgtttatcatacatgtactcctctaag
cttgctgacattgtcctgtcccctgttgaactcttcaagagaatgattggtcaggttgaa
tgcttcatgtttgcaatccctgcagcacgggcaccgacacctgtttgttggtgcagtaaa
accaatcattctgtgtttctccagccaacatataaggaaaaatgcactgaaactttgtca
ccccttctatcgcctattagacctgcaattgtccgcaggcaagtgtatttccctgacagg
cgactcatacaatttgactgtggaaagctgcaagagcttgcggttttgctaaggaaactg
aaatcagaaggccaccgagcattaatatttactcaaatgacaaagatgcttgatgtcttg
gaggcttttattaatttgtatggctacacttacatgcggttggatggatctactcagcca
gaggagaggcaaacactaatgcagaggtttaataccaatcctaaaatttttctttttatc
ttgtccacccgtagtggtggtgttggtattaatctggtgggggcagatacagttatcttc
tatgatagtgactggaatccagctatggatcaacaagctcaagatcgatgccatcgaata
ggacagacacgtgaagtgcatatatatcggttaattagtgagagcaccattgaagagaac
atcttaaagaaagcgaatcaaaagcgtgctcttgatgatctagtcatacagagtggagga
tacaacactgaatttttcaagaaattagatcctatggaactgttctcaggtcacagggca
cttccaaataagaatatgcagaaggagaaaaatcataacattggaattgagggttctgta
tctgttgcagatgtagaggctgctttgaagtacgcagaagatgaagcggattatatggca
ttgaagaaagttgaacaggaagaggctgtggaaaaccaggaattcacggaagatgccatt
gggagagtagaagatgatgagttagtgaatgaggatgatatgaagcctgatgaggctgtg
gagcaggttggctgtactacttcaagtaaagacagtggattgatgttaattgggagtgat
ccaaatgaagagagagctctcacttttgctggtaaagaagatgatgttgatatgctggct
gatgtcaaacagatggctgcagcagcagccgctgctggacaagcaatctcatcatttgag
agtcaacttcgtccaattgatcgatatgcgatacgtttcctggagttatgggacccaatc
atagacaaggcagcaatggaatctcaagctacatttgaggaggcagaatgggaactagat
cggattgaaaagtttaaggaggacatggaagctgaaattgacaatgatgaggagcctttt
gtatatgaaagatgggattctgattttgcaactgaggcataccgacagcaagttgaggcc
ttggctcaacaccagttgatggaagaactggaatgtgaagctaaagaaaaggatgatgca
gatgacgaaaattatggttctacaaggaatgaaatggcaagtgatcctaaacccaagtca
aagaagaaaccaaagaaagccaagttcaaatctctgaagaaaggatctttagcttctgat
tctaaagctgtgaaagaagagccattgatggaacctatgtccatagatgatgaagatgtt
ttccacgggatggtcacattttcagacatgatgtcatcacattcaagtatgcagaaaaag
cgtaaaaaggctgaagcaacggcagatggtgaagaagataggatcatgaagaagaggtct
aagaagttcaagaaggctcctgaaataggtcctttaagttttgaaaccaacttgtcaaat
aagcagcatgatgaatctaaagaatcaaacccatgtgagagtgctgttgttgatcttgag
cttaagtcagcaagcaggggtaagatgggaggaaaaatctccataactgtcatgccagtg
aagcggattctaatgatcaaaccagagaagttaaagaagggaaacatttggtcaagagac
tgtgttccatctcctgatttttggtttccgcaagaggatgcagtattatgtgctgttgta
catgaatatggcccacattggagcttggtgagtgaaacactgtatgggatgactgctggt
gggttttacagggggagatatcgccatcctgtccattgctgtgagagatttcgagaactt
gtccaaagatatgttttatctgcacctgaaaatcccaataatgagaaggtcagcaatact
ggctctggaaaggctcttctcaaagtaacagaggataacattcgaatgttactagatgtt
gctattgacctgccagatagtgagttacttcttcagaaacacttcactgccctgcttact
tctgtctggaggatgacatcccgtgttcatcaccgtcaaaaccacctaccttatcgaaat
gggcagtattctactgggaggtttttcagttctactgtcaaccaaatttcttggaattcc
gtcagggaaccaacagaaaggacgaactggaataattttggttacagtagcagcaggtta
gtagcagctgctctccatgatgcaaacaataaacaacatgatgactcagccttcctatct
aaccgaagggaggaagtctcaactgttccagagcagctggaaataaggctggaaattgag
agagatttctgtgattccatgattcccttgccatctgtcataaatttatcaatattgggc
tcagagccgccatcagctgtcaacaaccctatagaggaaagtcagattctcaagtcttca
caggatatggctgagaaccgtttcagggccgcatcaagagcttgttttgatggtactctg
gattgggcttcatcagccttcccaacaagtgatattaagccgagatctgcaataaaatca
cattccttgggaaagcacaaactctgtacctctgactctatcaggccttctaaatcaaag
ttcaaaaaggttgcagttgagcctagtgagatgcaccaccttatttggtcaccactaccg
aagccaacatttgcattcaatgattccaatccaaggtttgatctgggatcacccgtgagt
ttggacgctggtatctccactccttccttcaatgaggagctttgttgggaacctgagagt
ttggagctgttctcgcatcactattctcctaacctcttctcggaccttgatgatttttca
ttgttgccagaatatatcgacattgggtag
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integrated database retrieval system
