Vitis riparia (riverbank grape): 117920565
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Entry
117920565 CDS
T07274
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri00040
Pentose and glucuronate interconversions
vri01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
117920565
Enzymes [BR:
vri01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
117920565
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
117920565
NCBI-ProteinID:
XP_034694068
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Position
8:complement(13875930..13885442)
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AA seq
373 aa
AA seq
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MGGAHGRCSGAHRKHPTPVYTTFPDTTAPASAFGRDPSNTVRTNMSCLPYAHVDSNLRAL
AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGIIHLSSYLN
VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSKHIWIDR
CSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGT
RQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKYLTEKAAD
KEEERTGCLRSEGDLFITGTQAGLMTVASEMFHPREFYPTWTVEAPSDALKQVLHHCTGW
QCVPRPADEAAIA
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgctcacggccgttgctctggcgctcatcggaagcatcccacccccgtctac
accacttttccggacacaacagcccctgcctcagcctttggtcgtgatccatcaaacaca
gtccgcaccaacatgtcttgtctgccttacgctcatgttgattccaacttaagagctctg
gctgggcaggccgagggtttcggccgtcttgccattggtggtcttcacggacctctttat
catgtcaccactctagcagatgatgggccaggatcacttcgtgatggatgtcgtaagaaa
gaaccactttggattgtctttgaagtttcaggcatcattcatctctcatcttacctgaat
gtatcatcttataaaactattgatgggcggggccagaggataaaactcacaggaaagggt
ttaaggctgaaggaatgtgagcatgtaattatatgcaatctagagtttgaaggtggtaga
ggacatgatgttgatggcattcaaataaaacctaattcaaagcacatatggattgatcgt
tgcagcctccgtgattttgatgatggactgattgatatcactcgtgcaagcacggatatt
accatttccagatgtcacttctcacagcatgacaagacgatgctcattggagcagaccca
tctcacactggtgatagatgtattcgggtgaccattcatcattgctttttcgatggcact
cgacagcggcaccctcgtgttagatatgggaaagtacatctatataataattacaccaga
aactggggcatttatgctgtttgtgccagtgtagaatcacagatatactcccaatgcaat
atatacgaagcaggacataagaaggtggcatttaaatatcttacagagaaggcagctgac
aaagaagaggaaagaactggctgtctaaggtcagaaggggacttgttcataaccggaact
caagcaggcttaatgactgtggccagtgaaatgtttcaccctcgggaattctatcccaca
tggacagttgaggctccttctgatgctcttaagcaggttctccatcattgtacaggatgg
cagtgtgttccccggccagcagatgaagcagcaattgcttag
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