KEGG   Vitis riparia (riverbank grape): 117920831
Entry
117920831         CDS       T07274                                 
Name
(RefSeq) target of rapamycin complex subunit LST8 isoform X1
  KO
K08266  target of rapamycin complex subunit LST8
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri04136  Autophagy - other
vri04142  Lysosome biogenesis
Brite
KEGG Orthology (KO) [BR:vri00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    117920831
   04136 Autophagy - other
    117920831
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:vri04131]
    117920831
Membrane trafficking [BR:vri04131]
 Autophagy
  Other autophagy associated proteins
   mTORC1 complex
    117920831
   mTORC2 complex
    117920831
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd WDR55 WD40_Gbeta Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 DSE1_N Beta-prop_WDR75_1st Beta-prop_WDR41 WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_NOL10_N Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_Nup120_160 CFAP251_N ASA1 Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_IFT140_2nd Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_VPS8 Beta-prop_WDR19_1st PAC11 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_NWD2_C Ge1_WD40 Beta-prop_ACSF4 Beta-prop_IP5PC_F Beta-prop_SCAP PROPPIN Beta-prop_DCAF12 Cytochrom_D1 Beta-prop_WDR35_TULP_N CFAP43_N Beta-prop_WDR19_2nd Beta-prop_WDR35_2nd DmsR_N
Other DBs
NCBI-GeneID: 117920831
NCBI-ProteinID: XP_034694370
LinkDB
Position
8:21631454..21638014
AA seq 316 aa
MTQPSVILATASYDHTIRFWEAKSGRCYRTIQYPDSQVNRLEITPDKRQLAAAGNPHIRL
FDVNSSTTQPARSFDSHTNNVMAVGFQCDGKWMYSGSEDGTVKIWDMRARECQREYESRA
AVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAA
NNHGTCYVWRLLRGNQTMTNFEPLHKLQAHDGYILKCLLSPEFCEPHRYLATASSDHTVK
IWNVDGFTLEKTLVGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSNGQDIKVYQGHHK
ATVCCALHDGAEPSAA
NT seq 951 nt   +upstreamnt  +downstreamnt
atgacacaaccatcggtgatccttgcaacggctagctatgatcatacaattcggttttgg
gaggccaaaagtgggaggtgctaccgaactattcagtatcctgattcgcaagttaatcga
cttgaaataaccccagataagagacagctggctgcagctggaaatcctcatattcgactg
tttgatgtgaattcaagtaccacacaacctgcaaggagcttcgattcgcataccaacaat
gttatggcagttggatttcagtgtgatggaaaatggatgtactcaggttctgaagatggc
acagttaagatttgggatatgagggctcgggaatgtcaaagggaatatgaaagccgtgca
gctgtaaacacggttgttctgcacccaaatcagactgaactgatatctggtgaccaaaat
ggcaatatacgtgtgtgggatttgacagccaattcatgcagctgcgaattggtaccagaa
gtggatactgctgtaaggtctttaactgtgatgtgggatggcagcttggttgttgctgca
aataatcatggaacatgttatgtttggcgcttgttacgagggaaccagactatgaccaac
tttgagccacttcacaagctacaagcacatgatggatacattcttaaatgtctcctttca
cctgagttttgtgagccccacagatatctggccacagcatcttctgaccatactgtgaaa
atttggaatgtagatggtttcactttagaaaagaccttagtaggacatcagcgctgggtg
tgggactgtgttttctctgtggatggtgcctatcttatcacagcttcttctgatacaaca
gcaagactttggtccatgtcaaacggccaagacatcaaagtctatcaaggacatcacaaa
gcaactgtttgttgtgctcttcatgatggagctgagccctctgctgcctga

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