KEGG   Vitis riparia (riverbank grape): 117921115
Entry
117921115         CDS       T07274                                 
Name
(RefSeq) UBP1-associated protein 2C-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117921115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117921115
   03041 Spliceosome [BR:vri03041]
    117921115
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     117921115
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     117921115
Spliceosome [BR:vri03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    117921115
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 RRM_11 Cut8
Other DBs
NCBI-GeneID: 117921115
NCBI-ProteinID: XP_034694800
LinkDB
Position
8:complement(20298106..20302974)
AA seq 355 aa
MNSQTQVESRGTTMEDLKKRKLEEASNGQISSSPEELKLLLDPLSKSQLVDLLSKLGSQY
PSIAEEIKSVASADPVHRKLFVRGLAWNTTSETLCAAFRPHGEIEEGAVIVDKTTGKSRG
YGFITYKHMESTQSALQAPSKLIDGRMAVCNLACEGLSGASTTPDQAQRKLYIGGLAPDV
TSEVLLSFFGRHGEIEEGSVAYDKETNESRGFGFVTYKTVEAAKKAIDDPQKFLGGRSII
VKLADSHKGKMIQAQLSTAVVPIALPLAAGYPQQPGKPPASATPVAYTYPQAGPTYPAYP
GPPAGPAPYSSTAPAPYPSQPQMPYSSATVMKDPLGLPPTPTVGMGGYPYYFAKQ
NT seq 1068 nt   +upstreamnt  +downstreamnt
atgaattctcaaacccaagttgaaagcagaggcacaactatggaggatttgaagaagagg
aagctcgaagaggccagtaacggtcagatctcttcttcaccggaagagttgaaattactg
cttgacccgctttccaaatcccagttggttgatcttctctccaaactagggtcccaatat
ccttcaattgcagaagaaattaaaagtgttgccagtgcagatcctgtccaccgaaagctt
tttgttcgtggcttggcctggaatactacttcagaaaccttgtgtgctgcatttcgacct
catggagaaattgaagaaggtgctgtgatcgttgataaaacaacagggaaatcacgtgga
tatgggttcattacttacaaacatatggaatcaactcagagtgctctgcaagcacctagc
aaattgattgatggccgcatggctgtttgtaatttagcatgtgagggcttaagtggggca
agtactacacctgatcaagcccaaaggaagctctacattgggggcttggctccagatgtc
acaagtgaggtgctgctcagtttttttgggaggcatggtgagatagaagaaggttcggtt
gcatatgataaagaaacaaatgaatcacgtggttttggctttgttacatacaaaacagtt
gaggctgcaaagaaggccattgatgatccacaaaagttccttggggggcggagtatcatc
gtgaagctagctgattcacacaagggcaagatgatacaagcacagctatcaacagcagtg
gttccaatagctttacctttggcagctggatacccacagcagcctggaaaaccacctgcc
agtgccactcctgttgcctacacttaccctcaagctggaccaacataccctgcttaccct
ggtcctcccgcaggaccagctccatactcatccacagcacctgctccatatccatctcaa
cctcaaatgccttactcatcagccactgtaatgaaagacccactcggcctacctccaacg
ccaactgtgggaatgggaggatacccttactactttgccaaacaatga

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