Vitis riparia (riverbank grape): 117921274
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Entry
117921274 CDS
T07274
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03440
Homologous recombination
vri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117921274
03460 Fanconi anemia pathway
117921274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117921274
03036 Chromosome and associated proteins [BR:
vri03036
]
117921274
03400 DNA repair and recombination proteins [BR:
vri03400
]
117921274
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117921274
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
117921274
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
117921274
FA (Fanconi anemia) pathway
Downstream FA components
117921274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Motif
Other DBs
NCBI-GeneID:
117921274
NCBI-ProteinID:
XP_034695014
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All DBs
Position
8:complement(9652314..9664778)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSTWQIFSDSDNDFRWEISDAQSLTKPVEEASGAPIQPYDSTSRLPSMVDLLLQGCSKIL
ENDGPCVESPPMFRTGFGKSVTVKQSSIAKALSVLGDDDFGAGGQDHDRDNGCGFSNSLF
QTGSGKMVNISSAGLVRAKTLLGLEENSNHHSCQEHITKQNVMDGLDGGQNSSCLEMQED
LNSIKSEDAKPVPRPFSTSTSWRTGSINEAVPHLKQSEMYNPAPNPPPIKFHTAGGRSIS
VSSDALQRARSLLGDPELGTSLNEGDEDDMVSSFLKGSFRDASSDKENDSDTSLSHHEKA
KSKHTSKSFISPIRLFPNRVQSSVMPENTYSGSNLIKKYADDSKITCPQEPLSNRLCAPH
TIIDNSVANGNCSINKPLGRSSGGPLVDVSNRIGTLLTNKKQTITEKRRLGRRSSISPFK
RPRSSKFCPPLNSNVSFVPNGLSTLASEDTCCRKRVSTRYPFHAPRMYIKEYFGVLPFNK
NVLEHLSDEVRWMNPDNAEKYMFPDEYGLGFIGVDDLYQRLAQSGASMQYASKEWIANHY
KWIIWKLACYERFYPAKHMGRFLTMSNVLEELKYRYEREVNHGHRSAIKRILEGDASPST
MVVLCVSAIHSTCDMKIGTHSVSINGSENSNAAKVELTDGWYSIDAFLDALLSKQLFAGK
LFIGQKLRIWGAGLCGWVGPVSPLETSKTAGLLVHINGTYRAHWADRLGFCKGVGPPLAF
RCIKSNGGPVPQTLVRVTRIYPILYKERLSNGGSIVRSVRMETKMMQLYNQRCSTVVEGI
ISEFQRGTRDSCINNDNDSEEGAKIFEILERAAEPEVLMAEMTSEQLASFTSYQAKLEAI
RQSDLQKSIEMALEGAGLSTREVTPFMRVRVVGLTCKSYEGKIHHKEGLITIWNPTEKQQ
QFDLVEGQAYAVAGLMPLNSDSETLYLQARGSTTKWNPLSPLAIEHFEPFLNPRKSVLLS
NLGEIPLSSEFDIAALVVYVGEVYTAAHQKKQWVFVTDGSVSELGSEEASNCLLAISFCS
PSVDDSFVPVNSNLEGSTVGFVNLIKRAKDQMNQLWVAEATENSDYFFSFDLPHCYHLKN
AAASAERWAKISSLTIEKLKEKVLFIIGDCKG
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacatggcagattttctccgactccgacaacgatttccggtgggagatttcagat
gcacagagcttaaccaaacccgtagaagaagcaagcggtgctccgatccaaccatacgat
tccacttctcgtctcccgtccatggtggatctgttgcttcaaggatgttcgaagattctg
gagaatgacggtccctgtgttgagagccctccaatgttccggactggattcggaaaatca
gttacagtaaaacagtcttcaatagcaaaagcgttatctgttcttggtgatgacgatttc
ggtgctggaggccaagatcatgatagagataacggatgtggtttctcgaattctcttttc
cagactggctcagggaaaatggtcaatatttcttctgctggtctggtcagagccaagaca
ttgttggggttagaagaaaatagcaaccaccattcttgtcaagaacacatcacaaagcag
aatgtgatggatggcttagatggtggacaaaattcatcttgtttagagatgcaagaagat
ttgaacagtataaaaagcgaggatgctaaaccagttccaagaccttttagtactagcact
tcttggagaacaggatcaataaatgaggctgttccccaccttaagcagtctgaaatgtat
aatcctgcaccaaatccaccaccaatcaagtttcatactgcaggtggaaggtcgatatca
gtttctagtgatgcattgcaaagagcaaggagcctccttggtgacccagaattaggaact
tcattaaatgaaggggatgaagatgatatggtttcttcctttttgaaagggagtttccgg
gatgcttcttcagacaaagaaaatgattctgatacttctctttcccatcatgaaaaggca
aaaagtaaacatacatcaaaaagtttcatatctcccatccgtttgtttcctaaccgggtg
cagtcatcagtcatgccagagaatacatattcagggagtaacttgatcaagaaatatgca
gatgacagtaaaataacttgtccacaggagcctttaagcaacaggctctgtgcacctcat
acaataatagacaattctgtggcaaatggtaattgttcaataaataagccattaggaagg
tcatcagggggcccactagttgatgtttcgaatagaattggcacattgttaaccaacaag
aaacaaactattaccgaaaaaaggagacttggtagaagaagttctatctctccattcaag
cggccacgcagttccaagttctgcccccctttgaatagcaatgtgtcttttgttcccaat
ggcttatctactcttgcatctgaagatacctgttgcagaaaaagagtttccactcgatat
ccgtttcatgctcctagaatgtacatcaaggaatactttggagttcttcctttcaataag
aatgtgttggagcatttgtcagatgaggtaagatggatgaatccagacaatgcggaaaag
tatatgttccctgatgaatatggtttaggcttcattggggtagacgatttataccagaga
ctggctcagtctggagcttccatgcaatatgcttctaaagagtggattgctaatcattac
aagtggatcatttggaaacttgcttgttatgagagattctatccagctaaacatatggga
agatttttgacaatgtctaacgtgcttgaggaattaaaatatagatatgagagagaagta
aatcatggccaccgttctgcaattaagagaatcctggaaggagatgcatcgccttctaca
atggtggtgctatgcgtttctgccattcattcaacctgtgacatgaagattgggactcac
tctgtgtcaataaatggttctgaaaatagtaatgctgcaaaagtggagctaactgatggg
tggtattcaatagatgcttttttggatgcattgctgtcaaagcaactttttgctggaaaa
ttgttcataggacagaaacttcggatctggggagcaggattatgtggctgggttgggcct
gtttcaccccttgagacatcaaagacagctggtttgttggtgcacataaatgggacgtat
agagctcattgggctgatcgactgggattttgtaagggtgttggtcctcccttggcattt
cgatgtatcaagagtaatggtgggccagttcctcagactttagttcgagtcacacggata
taccctattctctacaaggaaaggttaagtaatgggggctctatcgtcagatctgtaagg
atggagaccaaaatgatgcaactgtacaaccagaggtgctctactgtagtagagggtatt
atctccgagtttcagaggggcactcgagattcctgtattaataatgacaatgatagtgaa
gaaggggcaaaaatatttgagatacttgagagagctgctgaaccagaagtcttaatggca
gagatgacctcggagcagcttgcttcattcaccagttatcaagcaaaactagaggcaatc
aggcagtcagacctgcagaaatcaattgagatggctctggaaggtgctggcctgagcaca
agagaggtcactccatttatgagggtgagggtggttgggttaacttgtaaaagttatgaa
ggaaaaatccatcataaagaaggcttgataactatttggaacccaacagagaaacagcag
caatttgatctggttgaggggcaggcatatgcagtagctggactgatgccacttaactct
gattcagagaccctttacttacaagcaagaggatctactaccaaatggaatcctttatct
cccttggcaattgaacattttgagccattcttgaatccacgaaaatcagttttattgtca
aatttgggtgaaattcctctgtccagtgaatttgatatcgctgcattggttgtatacgtc
ggtgaggtttatacagctgctcaccaaaagaagcagtgggtatttgtaacagatggctct
gtatctgagttagggtctgaagaagcatctaattgtttgcttgccatcagcttctgctca
ccatctgtagatgattcatttgtgccggtcaactctaaccttgagggatccacagttggc
ttcgtcaatctcatcaagagagcaaaggatcaaatgaatcaactctgggtagcagaagcg
actgaaaattcagactatttctttagttttgacctgccacactgttatcacctcaagaat
gctgctgcctctgctgaaagatgggcaaaaatatctagcttgacaattgagaagctcaag
gagaaggtcttatttattattggtgattgtaaaggctag
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