Vitis riparia (riverbank grape): 117921503
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Entry
117921503 CDS
T07274
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117921503
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vri01009
]
117921503
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117921503
03036 Chromosome and associated proteins [BR:
vri03036
]
117921503
Protein phosphatases and associated proteins [BR:
vri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
117921503
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
117921503
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
117921503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_RIG_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ComGF
Motif
Other DBs
NCBI-GeneID:
117921503
NCBI-ProteinID:
XP_034695278
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All DBs
Position
9:2196727..2207488
Genome browser
AA seq
513 aa
AA seq
DB search
MNGDDTAAPSAPPPPQLEWKFSQVFGERAAGEEVQEVDIISAIEFDKSGDHLATGDRGGR
VVLFERTDTKDHGGSRRDLERMDYPIRHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR
WCQTANGALFLLSTNDKTIKFWKVQEKKVKKISDMNLDPSKAVGNGSVASSSNSTSPKPY
LANGGSPDRSYSYLSNDFSFPPGGIPSLRLPTVVSSPETSLVARCRRVYAHAHDYHINSI
SNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEFHPTHCNMLA
YSSSKGSIRLNDLRQSALCDSHSKLFEEQEAPGSRSFFTEIIASISDIKFSKDGRFILSR
DYMTLKLWDINMDSGPVSTFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGMRVATGSYS
NLFRVFGCSPGSTEATTLEASKNPMRRQVQTPSRPSRSLSSITRVVRRGADSPGVDANGN
SFDFTTKLLHLAWHPSENSIACAAANSLYMYYA
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtgatgacaccgcagctccctccgcgcctcctccgccgcaactggagtggaaa
ttctctcaggtattcggcgagcgggcggccggcgaggaagtgcaggaagttgatattatt
tctgcaattgagtttgataaatctggtgaccaccttgctactggtgatcgtgggggccgg
gtggttctatttgagaggactgatacaaaggatcatggaggatcaagaagggatcttgag
aggatggactacccaattaggcatcccgaatttcgttataaaaccgagtttcagagccat
gaacctgagtttgactatctgaagagcttggaaatagaggagaaaatcaataagatcaga
tggtgccagacagcaaatggtgccctgtttcttctatctacgaatgataaaaccattaag
ttttggaaggtccaagaaaagaaggtcaagaagatttctgacatgaatttggatccttca
aaagcagtaggaaatggcagtgttgctagttcaagtaactcaacaagtcctaaaccctat
cttgcaaatggtggatccccagatagatcttacagctatctgagcaatgatttttccttc
cctccagggggcattccatctctacggttgcctacggtagtatcaagccctgagaccagc
ctggtggctagatgtcgtagagtttatgctcatgctcacgactatcatatcaattctatt
tcaaataatagtgatggtgaaacatttatatcagctgatgatctgcgaataaacctttgg
aacttggaaattagcaaccaaagcttcaatattgttgatgtgaagcctgcaaatatggag
gatctaactgaggtgataacatcagcggagtttcaccctacccattgtaacatgttagca
tatagtagttcaaaaggctcaatccgccttaatgatttgcgacagtcagcactgtgtgat
tctcattctaaattgtttgaggaacaagaggcacctggttcaagatcatttttcacagag
ataattgcctcaatttcagacattaaattttccaaggatggaagatttatactcagtcga
gattacatgacccttaagttatgggacattaatatggactcaggcccagtttcaaccttc
caggttcatgaatatttaagacctaagttgtgtgatttatatgaaaatgattcaatcttt
gataaatttgaatgttgtctgagtggcgatggaatgcgtgtagctacaggttcttacagc
aatcttttccgagtttttggttgttccccagggagcactgaggcaacgaccttggaagcc
agtaaaaatcccatgaggagacaagttcaaaccccttcgaggccttccagatccttgagc
agtataacacgcgttgtgaggaggggagccgatagcccaggagttgatgcaaatggaaat
tcttttgatttcactacaaagttgctacatctagcatggcacccaagtgaaaactcaatc
gcctgcgctgctgcaaacagcctgtacatgtattatgcataa
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