Vitis riparia (riverbank grape): 117921699
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Entry
117921699 CDS
T07274
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117921699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vri03041
]
117921699
Spliceosome [BR:
vri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117921699
Complex C
U5 SnRNP specific factors
117921699
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
117921699
NCBI-ProteinID:
XP_034695549
LinkDB
All DBs
Position
9:complement(7029256..7042915)
Genome browser
AA seq
2347 aa
AA seq
DB search
MWNSGQIAPPGTGGSTIPPPPAAQPSYTVLPSPAEAEARLEEKARKWMQLNSKRYGDKRK
FGFVETQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFIPHAVYKLLENMPMPW
EQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMIMYIKTEDPDLPAFY
YDPLIHPITTINKDRREKKNYEEEDDDDFFLPEEVEPLLTKTALYSDTTAAGISLLFAPR
PFNMRSGRMRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQGIWDTSDGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKELTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLAQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHIW
PSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQISGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDG
EKCIILTCSFTPGSCSLTAYKLTPTGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDNGPWNYNFMGVKHTVSMKYGIKLGTPREYYHEDHRPTHFLEFSNLEEGETAEG
DREDTFT
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacagcggccagattgcgccgcccggcaccggcggctccacgattccacctcct
cctgcagctcagccttcgtacacggtcttaccgtcgccggcggaggccgaggctaggctt
gaagaaaaggcgcgtaaatggatgcagctgaattcgaagcggtatggcgacaagaggaag
ttcgggttcgtggagacacagaaggaggatatgcctccggagcatgttaggaagattatc
agagaccatggggacatgtcctcaaaaaaatatcgtcatgataaacgtgtatatcttgga
gcccttaaattcattccacatgcagtttacaagcttcttgaaaacatgccaatgccttgg
gaacaggtccgtgatgtgaagattttataccatattactggagcgatcacatttgtaaat
gaaataccatgggttgttgaacctatatatttagctcagtggggtacaatgtggatcatg
atgcgaagggagaagagggatcgtcggcatttcaagagaatgcggtttcccccatttgat
gatgaggaacctccattggactatgctgataatctgttagatgtggaccctttagagcca
attcaattagagttagatgaagaagaagattctgctgtttacacttggttttatgaccat
aagcctcttgtcaaaacaaagcttataaatggccctagttaccggaaatggcatctttcc
ctcccaatcatggcaactcttcatcgacttgcaggccagctgctttctgatttaattgac
cgcaattatttctacttgtttgatatggagtcattctttacagctaaggcactgaacatg
tgcatacctggaggacctaaatttgagcccttatatcgcgacatggagaagggagatgag
gactggaatgaattcaatgacattaacaagcttatcattcggtcaccactcaggacggaa
tatagaattgcattccctcatctttataataataggcccaggaaagtaaagctttgtgtg
tatcatactcctatgattatgtacattaaaactgaggatcctgatttacctgcattctat
tatgatcctttgatacaccctatcaccaccattaacaaggaccggcgtgagaaaaaaaat
tatgaagaagaggatgatgatgatttctttttgccagaagaggtggaacctttgttaaca
aaaacagcactttatagtgacaccacggctgcaggtatttcactgttgtttgcaccacgc
ccttttaatatgagatctggtcggatgaggcgggctgaagatataccccttgtgtcagag
tggtataaggaacactgccctccatcatatccagttaaagttcgggtcagctaccagaaa
ttgttgaaatgttttgtgttgaatgagctgcatcacagaccacccaaggctcagaagaaa
aaacacttgttccggtctctccaagctacaaagttcttccaaactacagaactagattgg
gctgaagcgggtctccaagtttgtaagcaagggtataacatgttgaatctgttgatacat
aggaaaaatttgaattaccttcatcttgattataattttaatctgaagccggtgaagact
ctcactacaaaagaacgtaaaaagtcacgatttggtaatgcttttcatctctgccgtgaa
atccttcggttgacaaagcttgtagttgatgccaatatccagttccgtttgggaaatgtg
gatgcattccaattggctgatgggttgcaatatacattttcacatgttggccagttgact
ggaatgtaccgctacaagtacaggcttatgcggcagatcagaatgtgcaaggacttgaag
cacttgatttattaccgcttcaatactggacctgtggggaaaggcccgggatgtggattc
tgggcaccaatgtggagggtgtggctgttcttccttcgtggtatagtgcctctattggaa
aggtggttgggaaatttacttgcacggcaatttgaagggcgccattcaaagggggtggcc
aagactgttacaaagcaacgtgtcgaaagccatttcgacttggagcttcgagctgctgtt
atgcatgatgttcttgacgctatgccagagggcattaagcagaataaagcaagaactatc
ctgcagcatcttagtgaagcgtggcgttgttggaaagcaaatattccatggaaggtgcct
ggtttgccagttcccattgagaatatgattcttcgttatgtcaagtcaaaagcggattgg
tggacaaatgttgcccactataatcgtgaacgtataagaaggggtgctacagttgataag
acagtttgtcgaaagaaccttggtagattgactcgcctttggctgaaggcagaacaggaa
cgccaacataattacttgaaggatggtccatatgtcacaccagaagaagcagtggccatt
tacactaccactgtgcattggttagagtcaagaaagttctccccaattccattccctcca
ttgtcttacaagcatgacacaaagcttcttatccttgctttggagagattgaaggaatca
tacagtgtggctgtgaggttaaaccaactacagagagaagagttgggtcttattgaacaa
gcttatgataatccacatgaggctttatcacggattaagcgtcacctgcttacacagcgt
gccttcaaagaagttggcattgagttcatggacctgtatagttatctaattccagtttat
gagattgaacctcttgagaagatcacagatgcatatcttgaccaatatttatggtatgaa
ggtgacaagcgtcatctctttccgaactggattaagcctgcagattcagagccacctccg
cttttagtgtataaatggtgtcaaggtataaacaatttacaaggaatatgggacacaagt
gacgggcaatgtgtagtcatgcttcaaacaaagtttgagaagttctttgaaaagattgat
ttaacaatgttaaacaggcttctacgcttagttcttgaccataatattgctgattatgtc
actgcaaagaacaatgttgtgctgtcttacaaggatatgagtcacactaactcatatggc
cttatacgtggtcttcagtttgcttcatttgttgtacagtattatggacttgtgttggat
ctcttgcttcttggattgactagagccagtgaaattgctggtcctccacagatgccaaat
gagttcattacttattgggataccaaagttgaaacccggcatccaattcggttgtattct
aggtacattgacagggtgcatatattgttccgctttacccatgaagaggctcgggatctt
attcagcggtatctcactgagcatcctgatccaaacaatgaaaatatggttggatataac
aataagaagtgttggccaagagatgccagaatgaggctcatgaaacatgatgtcaatctt
gggagaagtgtgttctgggatatgaagaatcgtcttcctcgaagtatcacaacattagag
tgggagaacagctttgtatctgtatacagcaaggacaatccaaacttgcttttcagcatg
tgtggatttgaagttcggatactgcctaagataagaatgacccaagaggcattcagcaat
accagagatggagtttggaatttgcagaatgaacagaccaaagaattgactgctgttgca
ttcttgcgggttgatgacgagcacatgaaagtgtttgagaatcgtgtaaggcaaatcctt
atgtcttcaggatcaacaacattcacaaaaattgtcaacaaatggaacacggctctaata
ggtctcatgacatatttccgtgaagcaacagtccatactcaagaactgttagatttgctg
gtcaaatgtgaaaataaaattcaaacccgtatcaagatcggattgaattcaaaaatgcct
agcaggtttcctcccgtgattttttacaccccaaaagaaattggaggacttggcatgtta
tcaatgggtcacatattgattcctcaaagtgatctcagatacagtcagcagactgatgtt
ggtgtaactcattttaggagtggaatgagtcatgaagaagaccagctgattccaaatctt
tatagatacatacaaccatgggagagtgagttcatagattcacagcgtgtttgggctgag
tatgcactgaagaggcaggaagcacagtcacaaaacaggagattgacccttgaagatctg
gaagattcatgggataggggaatacctcgtatcaatactttgttccaaaaggatcgtcat
accctggcatatgacaagggatggagagtgcgcactgattttaaacagtatcaagttttg
aaacagaaccctttctggtggacacaccagcggcatgatggaaaactatggaacttaaat
aactatcgaactgatgtcatccaagctctcggaggagtggagggaattcttgagcatacc
ttattcaaaggaacatactttccaacttgggaaggtctgttttgggagaaggcttctggt
tttgaggagtccatgaagtataagaagctgactaatgcacaacgatctggtctcaaccaa
attcctaaccgtaggtttaccctttggtggtcacctacaataaatagggccaatgtttat
gtgggtttccaagtgcagttagatctaactggaatattcatgcatgggaagattccaaca
ttgaaaatatcattgattcagatattccgtgctcatttgtggcaaaaggttcatgaaagt
gttgtcatggatctctgtcaagttttggatcaggagttggatgccttggaaattgagact
gtgcaaaaggaaaccatccatccaaggaagagttataaaatgaacagttcttgtgctgac
attctcctctttgctgcccatagatggcccatgtcaaagcctagtttagtggctgagtca
aaggatgtgtttgatcagaaagcaagcaataagtactggatagatgtgcagctccgctgg
ggggattatgattctcatgatattgagcgttatactcgtgccaaatttatggattataca
acagataacatgtctatttacccatctccaaccggggtgatgattggtattgatcttgct
tataacttgcattctgcatttggtaactggtttcctgggtcaaaaccactgcttgctcag
gcaatgaataagatcatgaagtcaaatccagctttatatgttttgagagagcgtataagg
aaagggttgcagttgtattcttcagagcctacagaaccatatttgtcatctcaaaattat
ggggaaatctttagcaatcaaataatatggtttgtagatgataccaatgtgtatcgtgtc
acaatccataagacatttgaaggaaatctcacaacaaaacctatcaatggtgccatcttc
atatttaatccgaggactgggcagctgtttttaaaggtcattcacacaagtgtgtgggca
ggacagaagcgtcttggccagctggcaaagtggaaaacagcagaagaagtggctgctctt
gttcggtctctgcctgtggaagaacagccaaagcaaatcattgtgactcgtaaaggaatg
ctggatcccttggaggtccacttgctggatttccccaatatagttattaaaggaagtgaa
ctgcaacttccgttccaggcttgcttgaagattgagaaatttggtgatctaatcttgaag
gctacagagccacaaatggttttgttcaatatctatgatgattggttgaagagtatttcc
tcctacactgcattctcccgactcattttgattctgcgtgcacttcatgtgaacaatgag
aaggcaaaaatgttactaaagccagacaaaacaattgtcacagagccacaccacatctgg
ccttctctcactgatgaccaatggatgaaggttgaggttgctttgagagatcttatactc
tctgattatgccaagaagaacaatgtgaacacatcggccctgacacaatctgagattcgt
gatattattcttggagctgagattactccaccttctcaacagagacaacagatagctgag
attgagaaacaggcaaaagaagcaagtcagctgacagctgtcacgacaaggaccacgaat
gtgcatggtgatgaactcattgtcaccaccacaagtccatatgagcaatctgcatttgga
tcaaagacagattggcgagtaagagcaatctcagctacaaatctctatcttcgggtcaat
catatttatgtgaattcagaggacataaaggaaacagggtatacttacattatgcctaaa
aatattttgaagaaatttatctgcatagcagatttgcggacacaaatttcaggttacttg
tatggtataagcccaccagacaatcctcaggttaaggaaattcgctgtattgccatgccg
ccacagtggggtacccatcagcaagtgcatctcccatctgctcttcctgagcacgatttc
ctgaatgatttggagcctttgggatggatgcatacacaaccaaatgagctgcctcaatta
tctccacaggatctcacttctcatgctcggattcttgagaacaacaagcagtgggatgga
gagaagtgtatcattcttacctgcagttttactccaggttcttgctcattgactgcgtat
aagctcaccccaactggatatgagtggggtcgtgtgaacaaggacactggaagcaatcct
catggttatctgccgacgcattatgagaaggtccaaatgcttttgagtgaccgattcctt
ggtttctatatgattcctgataatggtccctggaattacaacttcatgggagtgaaacat
acagtgagtatgaagtatgggatcaagctcgggacaccacgagaatactatcatgaagac
cacaggccaactcatttcctggagttcagcaacttagaggagggtgagactgcggaggga
gatcgtgaggatacattcacctag
DBGET
integrated database retrieval system
