KEGG   Vitis riparia (riverbank grape): 117922006
Entry
117922006         CDS       T07274                                 
Name
(RefSeq) sm-like protein LSM1B
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117922006
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vri03019]
    117922006
Messenger RNA biogenesis [BR:vri03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117922006
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     117922006
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 117922006
NCBI-ProteinID: XP_034695854
LinkDB
Position
9:complement(684109..690289)
AA seq 128 aa
MSWAGPEDIYLSTSLASYLDKKLLVLLRDNRKLLGILRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK
RMEFLDLD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggcaggcccggaagatatctacctatccacatctcttgctagctatcttgac
aagaaacttcttgtactgctgcgagataatcgaaagcttttgggaatacttcgctccttt
gatcaatttgcaaatgccgttcttgagggtgcatgtgagcgagtaattgtcggtgatctt
tattgtgacatccctttaggtttatatgtaattcgaggggagaatgttgttttgattggc
gagctggacttggagaaggaggaacttcccccacatatgactcgagtttcagcagcagag
attaaaagggcacagaaagcagaaagggaggcgtcagatcttaaaggcaccatgaggaaa
agaatggagttcctcgatttggattga

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