Vitis riparia (riverbank grape): 117922021
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Entry
117922021 CDS
T07274
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117922021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117922021
03036 Chromosome and associated proteins [BR:
vri03036
]
117922021
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117922021
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117922021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
117922021
NCBI-ProteinID:
XP_034695884
LinkDB
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Position
9:complement(10931970..10966103)
Genome browser
AA seq
1069 aa
AA seq
DB search
MASASPFPLSGTLNELHSTRNSILFGTTMGMGCDAGTSGSQIALHQYKRRKISQKNVSSS
CEVHGEVEASLPTLRSSGYYMEPCLKELAKRELMDSGFCSRVQDFTVGRFGYGHVKFLGD
TDVRWLDLDQIIRFGRHEVVVYGDEGAKPEVGQGLNKAAEVTLVLQIRSSSFEEGRLNDI
VEKLRLCTKRQGADFISFNPSNGEWKFLVHHFSRFGLSEDDEEDIAMDDVTVVQHPLETN
AREVSDIDEATLVEPNGAVLSHSLPAHLGLDPIKMKEMRMVMFPVDEEEDHDFSGEFKQR
EQSFNKEYIRPPLHYSARRMSHKSGSSVARKTPLALLEYNPGSVDSSSSGTILMAQQNKG
MPLKTTKVEGFKLDLKHETPITESHSRNIVDAALFMGRSFRVGWGPNGILVHAGAAVGGN
DSQRVLSSVINLEKVAIDKVVRDENNKVRKELVDSCFISPLKLHKDIKHETKEVEIGSFK
LRLQNPVSNHLMLSEICRSYIGIIERQLEVPEVSSSARVVLMHQVMVWELIKVLFSAREI
SGQSKSAGADNEEDMMHDRSDGSSDVDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNE
SSDLEQILLLLTGRQLDAAVELAASRGDVRLACLLSQAGGSTINRADVAQQLDLWRTNGL
DFNFIEKDRIRLFELLAGNIHGALHGKNIDWKRFLGLLMWYQLPPDTSLPFVFRNYQQLL
ADGGAPHPVPVYIDEGPVEEAVSWSVGERYDLAYYLMLLHASEGSEFGLGKTMFSAFSST
HDPLDYHMIWHQRAVLEAVGAFSSNDLHVLDMGLVSQLLCLGQCHWAIYVVLHMPFRDDF
PYLQATLIREILFQYCESWHSQELQRQFMEDLGIPLAWLHEAMAVYFNYCGDLSRALEHY
IACANWQKAHSLFMTSVAHSLFLSAKHSEIWRLATSMEDHKSEIEHWDLGAGVYISFYLI
RSSLQEENNTMCELDSLESKNAACKDFFSCLNESLAVWGGRLPVDARVAYSKMAEEICGL
LLSDSGEGSTRDVQLSCFDTVFSAPVPEDLHSSHLQNAVALFTCSLLEV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgcttctccctttccactttctgggactttaaatgaacttcatagtacaaga
aatagcattttatttggtaccactatgggaatgggctgtgatgccggaacctctggctca
caaattgcactgcatcaatacaagagaagaaaaatttctcagaagaatgtttcttcttcg
tgtgaggttcacggtgaagttgaagcttccctacctactttgcgatcttcgggttattat
atggaaccttgcttgaaggagttggctaaaagggaactgatggattctggcttttgcagc
cgagttcaagattttacagttggaagatttggttatggacatgtcaagtttcttggagac
actgatgttagatggttggacttagatcaaataatcaggtttgggaggcatgaagtggtt
gtatatggagatgaaggtgcaaagcctgaggttggtcagggccttaacaaggctgctgaa
gtaactttggtgctacagataagatcatcaagttttgaagagggacgactaaatgatatt
gtggagaaattgaggctttgtacaaagagacagggagcagatttcatttcatttaaccca
tcaaatggtgaatggaaattcttggtacaccatttcagcagatttggattgagtgaagat
gatgaagaggatattgcgatggatgatgtgactgtagttcaacatccactggaaacaaat
gctcgtgaggtttctgatattgatgaagccacactagtggaacccaatggagctgtactt
tctcattctcttcctgctcatcttgggcttgatcctatcaagatgaaagaaatgagaatg
gtgatgtttcctgttgatgaagaggaggatcatgatttcagtggggaatttaaacagcgg
gaacaatctttcaataaggaatatatacgacctcctttacattattctgctcggaggatg
agccataaatctggttcatctgtggcacggaaaactccactagctttgcttgagtacaat
cctggtagtgttgactccagctcttctggaaccattcttatggcccaacaaaataaggga
atgcctttgaagactacaaaagtagaaggatttaagctggacctcaagcatgagacacca
ataacagaaagccattcccgcaacatagttgatgcagcattgttcatgggcaggtccttt
cgtgtagggtggggccctaatggcatccttgttcatgctggtgcagcagttggtggcaat
gattctcagagggttttatcttctgtaatcaatttagaaaaggttgcaattgataaagtg
gttagagatgaaaataacaaagtaagaaaggaacttgttgattcgtgtttcatttctcca
ttaaagctacacaaggatattaagcatgaaacaaaagaagttgaaattgggtccttcaaa
ttaaggcttcaaaacccagtctctaatcatttaatgctttcagagatttgccggagctat
ataggaattattgagaggcagctggaggtccctgaggtgtcttcctccgctcgtgtggtg
ttgatgcaccaagtaatggtatgggaattgataaaagttcttttttcggctagggaaatc
agtggacaatcaaaatctgcaggagctgataatgaggaagacatgatgcatgacaggagt
gatggttcttcggatgttgacctggaagcactccctcttattcggagagctgagttcagc
tattggttgcaagagagtgtttgccatcgggtacaggatgaagtaagctccttaaatgag
tccagtgatttggaacagatattattactgctgacagggcgacagctggatgcagctgtg
gaactggccgcttctagaggagatgtgaggctagcttgtttgctgagtcaggctggtggt
tccacaataaatcgtgctgatgttgctcagcagcttgatctttggagaaccaatgggctg
gacttcaatttcattgagaaggacaggataaggctctttgagttgcttgctggtaatata
catggtgcattgcatggcaaaaacattgactggaaaaggttcctaggtttattgatgtgg
tatcaactaccaccagacacttcattgccctttgtttttcgcaattaccagcagcttctt
gccgatggaggagctccacatcctgttccagtctacattgatgaaggacctgtagaagag
gctgtatcttggagtgtgggggaacgttatgacctagcctattatcttatgcttctacat
gccagtgaaggtagcgaatttggacttgggaagacaatgttcagtgccttctcatcaaca
catgatccactggactaccatatgatctggcatcagcgtgcagtgttggaagcagttggt
gccttcagttctaatgatcttcatgttcttgacatgggacttgtttcccagcttctgtgt
ctagggcaatgtcactgggccatctatgtggttcttcatatgccctttcgtgatgatttt
ccataccttcaagctactctcattcgggaaattttgttccaatattgtgaatcttggcat
tcacaagaattacaacgccaatttatggaggacttaggcattccattggcatggttgcac
gaggcaatggcagtatacttcaattactgtggtgatctttcaagggcccttgaacactat
attgcatgtgcaaattggcaaaaggctcactctcttttcatgacttcagttgctcattca
ttgttcttgtcagccaaacactcggagatatggagacttgcaacttccatggaagaccat
aagtctgaaattgaacattgggacttgggagctggagtatatatttcattctatctaata
cggagttctttgcaagaagaaaacaataccatgtgtgaattggattctctggagagcaaa
aatgctgcttgtaaagacttcttcagttgcttaaatgaatctttggctgtttggggtggc
agattaccagttgatgcaagagtggcatattcaaaaatggcggaggagatctgtggtttg
cttctatctgacagtggtgagggctcaacacgtgatgttcaattgagctgctttgacacc
gtttttagtgctccagtccctgaggatctccactcaagccatttgcagaatgcagtggcg
ctttttacgtgctctttgttggaggtgtag
DBGET
integrated database retrieval system
