KEGG   Vitis riparia (riverbank grape): 117922258
Entry
117922258         CDS       T07274                                 
Name
(RefSeq) ubiquitin receptor RAD23b-like
  KO
K10839  UV excision repair protein RAD23
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03420  Nucleotide excision repair
vri04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    117922258
  09124 Replication and repair
   03420 Nucleotide excision repair
    117922258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03051 Proteasome [BR:vri03051]
    117922258
   03400 DNA repair and recombination proteins [BR:vri03400]
    117922258
Proteasome [BR:vri03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    117922258
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      117922258
SSDB
Motif
Pfam: UBA XPC-binding ubiquitin UBA_7 CUE Rad60-SLD UBA_3 TECR_N UBA_RAD5A Herpes_UL32 Rad60-SLD_2 MmeI_C Ubiquitin_2
Other DBs
NCBI-GeneID: 117922258
NCBI-ProteinID: XP_034696213
LinkDB
Position
9:18894545..18916094
AA seq 411 aa
MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV
ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP
APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI
QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQETGGI
NSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLSGAAAGGLGSLEFLRNNHQFQALRA
MVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHA
INVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED
NT seq 1236 nt   +upstreamnt  +downstreamnt
atgaagctcactgtcaagaccttgaagggaagccattttgagattagggttcagccctcc
gatacggttatggcggtaaagaaaaacattgaagatgtacaaggaaaagacaactatccg
tgtgggcaacaattattgattcataatggaaaggtcttgaaagatgaaactacactggtg
gagaacaaagttacagaagatggttttctagtggtcatgcttagcaagagtaaatccata
ggagcaacagggacctcatctgcccagtctgcatccactcctgcaccagctgctattccc
actcctgccccagctcctattcccactcctgctccagctcctattgccactcctgctcca
gctcctattgccactcctgctccagctcctaatcctactgctgcagctgaagctcctgta
aatgcacaggccccaaggagcatttctacatctgaggtggcaacagatagtgtgcttgct
gatacctatggtcaagctgcttcaaatatagtttctgctaatcatcttgagcaaactatt
caacaaataatggatataggcggtggaacctgggacaaggaaactgttacccgtgcactt
cgagcagcttacaacaatccagagcgagctgtggattatttatattcagggattccagaa
gcagcagaagttgccgttccagtggctcatttccctgcagatcaagaaactggtggtatt
aattcatcaactgcagcggttgcagggtcaggtgcagcacctgctgcacctgcctctgga
gtacctaattcttctccccttaatatgtttcctcaggaaacgctttctggtgctgctgct
ggtggactaggatctcttgaatttctcagaaacaaccatcagtttcaagcactgcgtgcg
atggtacaagcaaacccgcaaattttacagcccatgcttcaggagcttggcaagcagaac
cctcatcttttaagattaattcaggagcaccatgcagagtttcttcagttgatcaatgaa
cctcttgaaggttctgaaggggatatatttgatcagcctgagcaagagttgccccatgct
atcaatgttactccagcagagcaggaggctattgagcggcttgaggcaatgggatttgac
agagctcttgtcattgaggcattcttagcttgtgatcgaaatgaagaattggcagtcaac
tatctgttggagaatgctggtgattatgaggactga

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