Vitis riparia (riverbank grape): 117922258
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Entry
117922258 CDS
T07274
Name
(RefSeq) ubiquitin receptor RAD23b-like
KO
K10839
UV excision repair protein RAD23
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03420
Nucleotide excision repair
vri04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117922258
09124 Replication and repair
03420 Nucleotide excision repair
117922258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
vri03051
]
117922258
03400 DNA repair and recombination proteins [BR:
vri03400
]
117922258
Proteasome [BR:
vri03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
117922258
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
117922258
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
CUE
Rad60-SLD
UBA_3
TECR_N
UBA_RAD5A
Herpes_UL32
Rad60-SLD_2
MmeI_C
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
117922258
NCBI-ProteinID:
XP_034696213
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Position
9:18894545..18916094
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AA seq
411 aa
AA seq
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MKLTVKTLKGSHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLV
ENKVTEDGFLVVMLSKSKSIGATGTSSAQSASTPAPAAIPTPAPAPIPTPAPAPIATPAP
APIATPAPAPNPTAAAEAPVNAQAPRSISTSEVATDSVLADTYGQAASNIVSANHLEQTI
QQIMDIGGGTWDKETVTRALRAAYNNPERAVDYLYSGIPEAAEVAVPVAHFPADQETGGI
NSSTAAVAGSGAAPAAPASGVPNSSPLNMFPQETLSGAAAGGLGSLEFLRNNHQFQALRA
MVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEGSEGDIFDQPEQELPHA
INVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAVNYLLENAGDYED
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcactgtcaagaccttgaagggaagccattttgagattagggttcagccctcc
gatacggttatggcggtaaagaaaaacattgaagatgtacaaggaaaagacaactatccg
tgtgggcaacaattattgattcataatggaaaggtcttgaaagatgaaactacactggtg
gagaacaaagttacagaagatggttttctagtggtcatgcttagcaagagtaaatccata
ggagcaacagggacctcatctgcccagtctgcatccactcctgcaccagctgctattccc
actcctgccccagctcctattcccactcctgctccagctcctattgccactcctgctcca
gctcctattgccactcctgctccagctcctaatcctactgctgcagctgaagctcctgta
aatgcacaggccccaaggagcatttctacatctgaggtggcaacagatagtgtgcttgct
gatacctatggtcaagctgcttcaaatatagtttctgctaatcatcttgagcaaactatt
caacaaataatggatataggcggtggaacctgggacaaggaaactgttacccgtgcactt
cgagcagcttacaacaatccagagcgagctgtggattatttatattcagggattccagaa
gcagcagaagttgccgttccagtggctcatttccctgcagatcaagaaactggtggtatt
aattcatcaactgcagcggttgcagggtcaggtgcagcacctgctgcacctgcctctgga
gtacctaattcttctccccttaatatgtttcctcaggaaacgctttctggtgctgctgct
ggtggactaggatctcttgaatttctcagaaacaaccatcagtttcaagcactgcgtgcg
atggtacaagcaaacccgcaaattttacagcccatgcttcaggagcttggcaagcagaac
cctcatcttttaagattaattcaggagcaccatgcagagtttcttcagttgatcaatgaa
cctcttgaaggttctgaaggggatatatttgatcagcctgagcaagagttgccccatgct
atcaatgttactccagcagagcaggaggctattgagcggcttgaggcaatgggatttgac
agagctcttgtcattgaggcattcttagcttgtgatcgaaatgaagaattggcagtcaac
tatctgttggagaatgctggtgattatgaggactga
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