Vitis riparia (riverbank grape): 117922560
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Entry
117922560 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117922560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117922560
03110 Chaperones and folding catalysts [BR:
vri03110
]
117922560
03029 Mitochondrial biogenesis [BR:
vri03029
]
117922560
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vri04147
]
117922560
Enzymes [BR:
vri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
117922560
Messenger RNA biogenesis [BR:
vri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
117922560
Chaperones and folding catalysts [BR:
vri03110
]
Heat shock proteins
HSP60 / Chaperonin
117922560
Mitochondrial biogenesis [BR:
vri03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
117922560
Exosome [BR:
vri04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117922560
Exosomal proteins of other body fluids (saliva and urine)
117922560
Exosomal proteins of breast cancer cells
117922560
Exosomal proteins of colorectal cancer cells
117922560
Exosomal proteins of bladder cancer cells
117922560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
117922560
NCBI-ProteinID:
XP_034696597
LinkDB
All DBs
Position
9:3371242..3376646
Genome browser
AA seq
609 aa
AA seq
DB search
MASSFATMSSIGYFTSFSSHTMDKKFLGSSRRLSSFASISANSFEGRKQSMVLQKRCSPK
VRAMAKELYFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV
AREVELEDPVENIGAXLVRQAASKTNDLAGDGTTTSVVLAQGLITEGVKVVAAGANPVQI
TRGIENTTKALVAELKLMSKEVEDSELADVAAVSAGNNYEVGYMIAEAMGQVGRKGVVTL
EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINVL
EDAIKGGYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTG
GTVIREEVGLSLDKAEKEVLGHAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIRNLVEAAD
QDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
TLLRLAAKVDAIKDTLDSDEQKVGADIVKRALSYPMKLIAKNAGVNGSVVIEKVLSSDNP
KYGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVARTFLTSDAVVVDIKEPEPIPAGN
PMDNSGYGY
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcatcatcttttgccaccatgtcttctattgggtatttcacatcgttcagcagtcat
acaatggataagaagtttctgggttcttccagaagattgtcttcatttgcttccatatct
gcgaattcttttgaaggcaggaaacagagtatggttttgcagaagagatgttctccaaag
gttagggcaatggccaaggagttgtatttcaacaaggatggctctgctattaagaagctt
caaacgggtgttaataagcttgctgatctagtgggggttactcttggtccaaaagggagg
aatgttgttctggagagcaagtatgggtccccgaaaattgttaatgatggtgttactgtg
gcaagagaggtagagttggaggaccctgttgagaacataggtgctnagttggtgagacaa
gctgcttcaaaaaccaatgatttggctggtgatgggacaactacttctgttgttctggct
caaggcttgattactgaaggtgttaaggtggtagcagctggtgccaaccctgttcaaatc
actaggggtattgagaacaccactaaagccctggtggctgagctgaagttgatgtcaaag
gaggttgaagacagtgaactagcagatgtggctgcagttagtgcaggaaacaactatgaa
gtaggatatatgatagctgaagccatgggtcaagtgggcagaaagggtgttgtgactctc
gaagaaggaaagagtgctgagaacaacttgtatgttgtggaaggaatgcagtttgatcgt
ggttatatctctccttacttcgtcacagacagtgagaaaatggctgttgaatatgaaaat
tgcaagctgcttttggttgacaaaaagatcacaaatgcaagggatctcattaatgttttg
gaagatgccatcaaagggggatatccaatcttgataattgcggaagatattgagcaggaa
gctcttgcaactcttgttgtgaataagctcaggggggcattaaagattgctgcactgaaa
gctcctggatttggagagcgcaaaagccaatatcttgatgatattgctatcctcactgga
ggaaccgtgattagagaggaggttgggttatcattggacaaagctgaaaaggaggtcttg
gggcatgctgctaaagtggtgctcaccaaggatacaactacaattgttggtgatggcagt
acacaggaagcagtaaataagcgagttgcacagatcagaaaccttgttgaggcagcagat
caggactatgaaaaagagaagcttaatgaaagaattgcaaaactttcaggtggtgttgct
gtcattcaggtcggagcacaaactgaaacagaacttaaagaaaagaaactgagagtggag
gatgcccttaatgcaacaaaggcagctgttgaggaaggtattgtggttggtggcgggtgc
acattgttgcgtctagcagcaaaagttgatgctatcaaagacactcttgatagtgatgag
caaaaggttggagcagatattgttaagagggcactaagctacccaatgaagttaatcgcc
aagaatgcaggggtcaacggaagtgttgtgatcgaaaaggtgttgtccagtgacaatcca
aaatatggttacaatgctgcaactggaaaatacgaggatttgatggctgctggtataatt
gatcccacgaaagtggtgagatgttgtttggagcatgcagcttcggttgcaagaaccttc
ctcacatctgatgctgtggtggttgacatcaaggagcctgaacccattcctgctggaaat
ccaatggataattcaggttatggatactga
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