Vitis riparia (riverbank grape): 117922959
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Entry
117922959 CDS
T07274
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117922959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117922959
04121 Ubiquitin system [BR:
vri04121
]
117922959
03036 Chromosome and associated proteins [BR:
vri03036
]
117922959
03400 DNA repair and recombination proteins [BR:
vri03400
]
117922959
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
117922959
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
117922959
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
117922959
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
117922959
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
zf-C3HC4_2
BRCT_2
zf-HC5HC2H
zf-RING_2
zf-RING_UBOX
zf-C3HC4
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
RTT107_BRCT_5
zf-RING_5
zf-HC5HC2H_2
zf-RING_10
zf-rbx1
zf-Nse
Motif
Other DBs
NCBI-GeneID:
117922959
NCBI-ProteinID:
XP_034697091
LinkDB
All DBs
Position
10:complement(12174834..12182017)
Genome browser
AA seq
1044 aa
AA seq
DB search
MGDSSHLERMGRELNCPICLSLLNSAVSLTCNHVFCNSCIMKSMKSGSNCPVCKVPYGRR
EVRPVPHMDSLVSIYKSMEAASGINIFVTQNAPSTKLSDKQQTEGDQNCGGQKADNASEE
RAKNQRKLKGKGPKRSLKTNPEDSGLNPAKPSFPGKKRVQVPQYPLSETPKRPAKLDGGL
SEMSKGGPKNNSVVLNEKPALNDNGELVFSPFFWLREDEDVENSSQQMDGDLALSSSLPN
VPSFSDIKGSDDEMPSELTPKGKVDTEFNVADPFDSEIFEWTQRACSPELCSSPMEMQVP
DSDEFDEIQKGENKPDSQSATKEEEAPRTENMNGMNCKEGTGCAAMRLPAMSSPETKNAN
GQNGIGISKKRGRKSNKKGQKKRAKRGADEVLGIHINAQSVAEDFIPVQDCDKDGSSNLR
KKTHKGCEKACFDNNATGAAPENVSSVSVGSKSLNQDDENIITALPASLVKKHVSDENLN
LKKRGRRCDNVNTQSQKGHTVRSKNQKLESAEDDMLGKGAITLNQINYDMFSHSPCVSLP
MADDGKASDRGEKASKHGRIISKVNQKHDKRLRPSKKLKVSTDDISKYGLIDDTQEGHTK
VSAKSTQPINNNQCNPEVRVLDYSSTAKKALSATSGGALRKCESIPNKISCAFCHSAEDS
EASGEMVHYFNGRPIAADHNGGSNIIHSHRNCTEWAPNVYFEDGTAVNLKAELTRSRRIT
CCCCGIKGASLGCYEKSCRKSFHFPCAKLTPQCRWDTDNFVMLCPLHASSKLPNEISERP
AKTRKKCSTKGRSDIQRAQVAVKHDISTSQHWNSHGSPGKLVLCCSALTVAEKDIVSEFE
RLSGVTVLKKWGPGITHVIASTDENGACRRTLKFLMGILEGKWILNTEWIKACMKAKEPV
AEEQYEIGIDIHGIRDGPRLGRLRLLNKQPKLFSGFKFYFFGDFMPSYKGYLQDLVIAAG
GTVLHRKPILGNQETLSSGSSMYETFIIYSLELPEKCGPDMKNQIFTCRRSEAEALVRST
GAKVASNSWFLNSIAACQVQNVAE
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgggcgattcttcacacctggagaggatggggagagaactcaactgccccatttgtttg
agtttactaaattctgcagtttcgcttacatgcaatcatgtgttctgcaattcatgtatc
atgaagtcaatgaagtcaggttcaaattgcccagtttgtaaagtgccatatgggcgtcga
gaggttcgccctgtgcctcacatggatagcttggtcagcatctacaaaagcatggaagct
gcttcgggaatcaatatttttgtcactcagaatgcaccatcaactaaattatcagataaa
cagcaaactgaaggtgatcaaaattgtgggggacaaaaagcagataatgctagtgaggag
agagcaaagaatcaaagaaaactgaaagggaagggaccaaaaagatcacttaaaaccaat
ccagaagattctggtctcaatcctgcaaaaccttcctttccaggcaagaaaagggttcag
gtgccacagtatcctctgtcagaaacccccaaacggcctgcaaagttggatggtggtttg
agtgaaatgagcaaaggtgggcctaagaacaattcagttgtactaaatgagaaacctgct
ctaaatgacaatggagaactggtattttcaccttttttctggttgcgagaggatgaagat
gtagaaaactcaagtcagcagatggatggggatcttgccttgagctcatcactgccaaat
gttccttctttcagtgatatcaagggttcagatgatgaaatgccttctgaattgacccca
aaagggaaggtggataccgaattcaatgttgcagacccatttgatagtgagatatttgaa
tggacacaaagagcttgctcccctgagctctgttcaagtcccatggaaatgcaggttcca
gattctgatgaatttgatgaaattcaaaaaggggaaaataaaccagattcacagagtgca
actaaagaagaggaagctcctagaacagagaacatgaatggcatgaactgcaaagaagga
acaggctgtgcagctatgagattgcctgctatgtcctccccagaaaccaaaaatgccaat
ggtcaaaatgggattggaatatcaaaaaagagaggtaggaaatcaaataaaaagggtcaa
aagaaacgtgccaagagaggtgctgatgaagttcttggaatccatattaatgcacagagt
gtagctgaagattttattccagtacaagattgtgacaaggatggcagttcaaatttgagg
aaaaaaactcacaaagggtgtgagaaggcttgctttgataacaatgctactggtgcagca
ccagaaaatgtttccagcgtatctgttggatcaaaatctctgaatcaggatgatgagaat
ataattactgcattgcctgcttcattagttaagaaacatgtcagtgatgaaaatcttaac
ttaaagaaaaggggcagaaggtgtgataatgtcaacacccagagccagaaaggtcatact
gtaagatctaaaaatcagaagttagaatctgctgaggatgacatgcttgggaaaggtgca
attaccctaaaccaaataaattatgatatgttctcccattcaccttgtgtttctttgcct
atggctgatgatgggaaagcttctgatcgtggtgagaaagccagcaaacatggcagaata
attagtaaagttaatcagaagcatgataaaagattgagaccttcaaaaaagttgaaggtt
tcaacagatgacatctcaaaatatgggttgatcgatgacactcaagaaggccataccaag
gtttctgcaaagagtacccaaccaattaataacaatcaatgcaatcctgaagtcagagtt
cttgattattcatcaacagcaaagaaggctctttctgccactagtggaggggctttgcgg
aaatgtgagagcattcctaataaaattagttgtgctttttgtcattctgctgaagattca
gaggcttcaggagagatggtccactacttcaatgggaggcccattgcagcagatcacaat
ggaggatctaacatcatacattcgcacaggaactgcacagaatgggcccctaatgtttat
tttgaggatggtaccgcagtcaatctcaaagctgaattaacaagaagtcggaggattaca
tgctgctgctgtggtatcaaaggggcatctctaggttgctatgagaagagttgtcgcaaa
agctttcattttccttgtgcaaagctaaccccacaatgtcgatgggatactgacaacttt
gtcatgttgtgtcctcttcatgcctcttctaagttgccaaatgaaatttctgaacgtcca
gcaaaaactagaaagaaatgcagtacaaaaggacgatcagacattcaacgagctcaagtt
gctgttaaacatgacatcagtactagtcagcactggaattcccatggatcacctggtaaa
ttggttctttgttgctcagctctcacagttgcagagaaggatattgtttcagaatttgag
aggttatctggagttacagtgttgaagaaatggggtccaggtatcacccatgtcattgca
tcaacagatgaaaatggagcatgcagaagaaccctaaaatttttgatgggtatcttggag
ggaaagtggattctgaacactgagtggattaaagcttgcatgaaagcgaaggagcctgtt
gcagaggagcagtatgaaattggtattgacattcatggaatcagagatggtcctcgactt
gggagactaagactcctgaataagcaaccaaagcttttcagtggctttaagttctatttc
tttggagacttcatgccttcatacaagggctacctacaagatcttgtaattgcagctgga
ggaactgttctacatagaaaacccattttgggaaaccaggaaactctatcatctggatcc
tccatgtacgaaactttcattatttacagccttgaactgcctgagaagtgtggtcctgac
atgaagaatcagatttttacctgccgccgatctgaagctgaggcccttgtaagatcaacc
ggagccaaagtagcaagcaattcatggtttctgaactccattgctgcttgccaggtgcaa
aatgttgctgagtaa
DBGET
integrated database retrieval system
