KEGG   Vitis riparia (riverbank grape): 117922970
Entry
117922970         CDS       T07274                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03020  RNA polymerase
vri03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117922970
  09124 Replication and repair
   03420 Nucleotide excision repair
    117922970
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vri03021]
    117922970
   03400 DNA repair and recombination proteins [BR:vri03400]
    117922970
Transcription machinery [BR:vri03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     117922970
DNA repair and recombination proteins [BR:vri03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117922970
SSDB
Motif
Pfam: RNA_pol_Rpb4 DUF7032
Other DBs
NCBI-GeneID: 117922970
NCBI-ProteinID: XP_034697105
LinkDB
Position
10:21238520..21243485
AA seq 239 aa
MGEKGGKGFSLNSNLGKSSTKSPLEASLTGKDDSAAKSKRGRKVQFNNGGLPEARLTSSL
MSGGKTDIPIAKGDLSKGGKGGRVLNGEKSAVPKPPAPLELRIEQELPKNAKCMMDCEAA
LILKGIQEQMVVLSEDPTIKIPLSFNKGLQYAQSSNCYASPQSVRRVLEPLSKYGVSDGE
ICVIANTCPETIDEVFALVPSLKPKWSTLREPLKDVLRGLAELKHSNQSSNPERSPGFS
NT seq 720 nt   +upstreamnt  +downstreamnt
atgggggaaaagggaggaaaagggttttcgctgaacagcaacttggggaaatcttcaaca
aaatctcctctggaagcttccctgacaggaaaggatgatagcgcagcaaagtcaaagagg
ggaaggaaagttcagttcaataacggaggattacctgaagctagacttactagttcactg
atgtctggtgggaagactgacatcccaattgctaaaggtgatttgagcaagggggggaaa
ggaggcagggttctaaatggtgaaaaaagtgctgtaccaaaacctcctgccccattggag
ctcaggattgagcaagaacttccgaagaatgctaaatgtatgatggattgtgaagctgca
cttatcttaaaaggaattcaggagcagatggtagtactgtctgaagatccaacaattaaa
atccctctgtcatttaacaagggactccagtatgcccaatccagtaactgttatgcaagc
ccccagtcagttagacgggttcttgagcctctctctaaatatggtgtttcagatggagag
atatgtgtgattgcaaacacttgtccagaaactattgatgaagtttttgcccttgtcccg
tccttgaagcccaagtggagcacgctcagggaacccctcaaagatgtattgcggggacta
gctgagcttaaacactcgaaccaaagctccaacccagagagatcccctggtttttcatag

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