Vitis riparia (riverbank grape): 117923486
Help
Entry
117923486 CDS
T07274
Name
(RefSeq) LOW QUALITY PROTEIN: katanin p80 WD40 repeat-containing subunit B1 homolog
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
vri04812
]
117923486
Cytoskeleton proteins [BR:
vri04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
117923486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Katanin_con80
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_SPT8
eIF2A
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_IP5PC_F
Beta-prop_VPS8
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
PROPPIN
PAN2_N
VPS8_N
Motif
Other DBs
NCBI-GeneID:
117923486
NCBI-ProteinID:
XP_034697690
LinkDB
All DBs
Position
10:290898..326408
Genome browser
AA seq
797 aa
AA seq
DB search
MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVSFDSSELLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD
FKSHEGQLQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETAGVRCMTFNPDGK
TLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNIHEGKLLGCSYNQSCVGVWVVDLSR
IEPYAVGNVTRLNGHSESKSSSSGNLSVLTENTTKASLGRLSISQNTELIMKETKSLGRL
SVSQNSDPVDKETKCLASTGSVPGTPQRVNLNTGPKTTLASSTTAPKRISAKAHSTANVS
AFNKSDVIPVIVPRTNVRLDQAAESRKEVGVSGRTIPFSLQSRTSDFRKSPNRRDELERP
TVSVPSENAGSKATDLTTVADRNIFPAVKCSTPGISAAERNVKDDRCIGSGRQEMNSTME
PPPNYHHENYDTRVHRANRDACSIEVQKGGRTRSLVANWEKREISPTYEGHTSSNFSGTV
SASNMLPFSARGYTPSTEKEAVPASDEDAITDIMEQHGQFVGSIQSRLSKLQVVHRFWXR
NDIKGAIGAMEKMADHSVFADVISILREKPDVVTLEICTSLLPLLTSLLESEMDRHLGIS
LEMLLKLVRIFGSVIHSTLSASSSVGVDIQAEQRLERCNLCFIELEKIKHCLPALTRRGG
SVAKLAQELNLALLEVL
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaaacgtgcttacaagctacaggaatttgtagcacactcttccagtgtaaac
tgtctcaagattgggaggaagtcatccagggttcttgtcactggtggagaagatcacaag
gtgaatctttgggccatcggcaagcccaatgccatactgagtttgtctgggcacacgagt
ggaattgattcggtaagttttgactcttcagagctgttggtggctgcaggagcggcaagc
ggcacaatcaagctatgggatttggaggaggcaaagattgttcgcacgcttactggccac
agatcaaattgcatatctgtggacttccatccatttggggaattctttgcatctggctct
ctggacacaaatcttaagatttgggatatccgaaagaaggggtgtatccacacttataag
ggccatacacgaggggtcaatgcaatcagatttacaccagatggccgctgggttgtgtct
ggtggagaggacaacactgtgaagctgtgggatctgactgctggaaagttgttgcacgat
ttcaaaagtcatgagggccagcttcagtgcatagattttcatcctcatgaatttctgctg
gcaacaggttcagctgatagaactgttaaattctgggaccttgaaacttttgagttgatt
ggttcagctggacctgagaccgctggagtgcgttgtatgactttcaatcctgatgggaaa
actctactctgtgggttgcatgaaagtctgaaagttttttcatgggaaccaataagatgc
catgatgctgtggatgtggggtggtctagattatcagatcttaacattcatgagggaaag
ctcctgggctgctcatacaaccaaagttgtgttggagtctgggttgtagatctctcgcgc
atagagccatatgcagttggtaatgtgactcgattaaatggtcattcggaatctaaatct
agttcaagtgggaatttgtcagtactgacagaaaacaccacaaaggctagtttgggcagg
ttatccatttcacaaaatacagagctgattatgaaggaaacaaaatctctgggaaggctg
tctgtctctcaaaattcagatcctgttgacaaggagacaaaatgtttggcatccacagga
agtgtacctggtactcctcaaagggtcaatttaaacactggtccaaaaacaactttggca
agttcaacaacagctccaaagaggatttctgcaaaggcccattcaacagcaaatgtttca
gcctttaataaatcagatgtgatacctgtaattgtccccagaactaatgtgaggttggat
caggcagctgaatccagaaaggaagttggtgtttctggaagaacaattccattctctttg
cagtcaagaacaagtgatttccggaagtctccaaatagaagagatgaattagagagacca
actgtttctgtcccatctgaaaatgcaggttccaaagctactgatcttaccacagttgca
gataggaatatttttcctgcggttaagtgctcaactccaggaatttctgcagctgaaaga
aatgtgaaagatgataggtgtattggatctggcaggcaagaaatgaattcaacgatggag
ccacctcctaactaccaccatgaaaattatgacacacgggtgcatagagcaaacagagat
gcatgctctattgaagttcaaaaaggaggaagaacccgttcgcttgttgctaactgggag
aagagagaaatatctcccacttatgagggacatacatccagtaatttctctgggactgtt
tctgcatctaacatgctcccatttagtgcgagaggatatactccatctactgaaaaggaa
gcagtgcctgccagtgatgaagatgctattacagatataatggaacaacacggtcaattt
gttggctctatccagtctcgcttatccaagttacaggtagtccatagattttggnaaagg
aatgacattaagggggctattggtgcgatggaaaagatggctgatcattctgtctttgct
gatgtaatcagcattttgagagaaaaacctgatgttgtgacactggaaatttgcacttct
ctcctgccactcctcacgagtcttcttgaaagtgagatggataggcatttaggcatttct
cttgagatgctccttaagctggtgaggatatttggttcagtgatccattcaactttatca
gcatcatcatctgttggtgtagatattcaggcagagcaaagactggagcgctgcaatctc
tgctttattgagcttgaaaagatcaaacactgcctgcctgccctaaccagaagaggaggt
tcagttgcaaaattggcgcaggagctgaatctagcacttctagaagtactatga
DBGET
integrated database retrieval system
