Vitis riparia (riverbank grape): 117923534
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Entry
117923534 CDS
T07274
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
117923534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117923534
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
117923534
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_4
LRR_At5g56370
LRR_6
F-box-like
F-box
Flu_PB2_2nd
Motif
Other DBs
NCBI-GeneID:
117923534
NCBI-ProteinID:
XP_034697762
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Position
10:18867575..18874324
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AA seq
583 aa
AA seq
DB search
MDSKRKMDSPESNVLTRSSPFPDEVLERVLGLVKSHKDRSSVSLVCKDWYNAERWSRTHV
FIGNCYSVSPEIVARRFPNIRSVTLKGKPRFSDFNLVPLNWGADIHAWLVVFASKYPLLE
ELRLKRMTVTDESLEFLATTFTNFKALSLLSCDGFSTDGLAAIATHCKNMTELDIQENGI
DDLGGGWLSCFPENFTSLEVLNFANLSSDVSFDALEKLVSRCRSLKFLKVNKNITLEQLQ
RLLECAPQLTELGTGSFHQELTTRQYAELESAFNNCKNLNTLSGLWEATPLYLPVLYPAC
TNLTFLNLSDAALQSGELAKLLAYCPNLQRLWVLDTVEDKGLEAVGSSCPLLEELRVFPA
DPYEQDVVHGVTEMGFVAVSYGCPRLHYVLYFCRQMTNAAVATIVKNCPDFTHFRLCVMN
PGEPDYLTNEPMDEAFGAVVKNCTKLQRLAVSGLLTDLTFEYIGKYAKNLETLSVAFAGS
SDWGMQCVLSGCSKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAK
QMPRLNVEVMKDEESDDSQADKVYVYRSVAGPRRDAPPFVLTL
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggattcaaagaggaaaatggactcgcccgagtcaaacgtgttgactcggtcctcacca
tttcccgacgaggtattagagcgagttctggggctcgtgaagtcccacaaagacagaagc
tcagtctctcttgtgtgcaaggactggtacaacgcggagagatggtcccggacccacgtg
ttcatcggcaactgctactccgtttcgccggagatcgttgctcggagatttcccaacatt
cgaagcgtgacgctcaaagggaagcctcgtttttcggatttcaatctggtcccgttgaac
tggggggctgatattcatgcttggcttgttgtgttcgcctccaagtaccctcttcttgag
gagttgaggcttaagagaatgactgttactgatgagagcttggagttcttggctacgacg
ttcaccaatttcaaagctctctcgcttttgagctgtgacgggttcagtacggatggactt
gccgccattgctactcattgcaagaatatgacggagcttgacatacaggagaatggcatt
gatgaccttggtgggggttggttaagttgctttcccgaaaacttcacgtcactggaagtg
ctgaattttgcgaatctgagcagtgatgtctcttttgatgctcttgagaaactagtgagt
aggtgcagatctttaaaattcttgaaggttaacaagaatatcaccctggaacaattacag
aggttgcttgagtgtgctcctcaactgacagagcttggtactgggtccttccatcaagag
ctcacaacccgccagtatgcagagcttgaaagtgcattcaacaactgcaagaatctaaat
actctctctggtttgtgggaagctactccactgtatctcccagttctataccctgcctgt
acgaatttgacgttcttgaatttgagtgatgctgctctgcaaagtggtgaacttgccaag
cttcttgcttactgtccaaatctacagcgtctttgggttctggacacagtagaagacaaa
gggctggaagctgttggatctagctgtcctttgctcgaggaactacgtgtcttccctgct
gatccctatgagcaggatgttgtccatggggtgactgaaatgggttttgttgctgtgtct
tatggctgccctaggcttcactatgtactctacttttgtaggcagatgactaatgctgcg
gtggcaactattgtaaagaattgccctgatttcacccactttcggctgtgtgtaatgaac
ccaggtgagcctgattatcttactaatgaacctatggatgaggcttttggtgcagtggtg
aagaattgcaccaaactccagagacttgcagtttcaggtctactgaccgacctcacattt
gagtatattggaaaatatgccaaaaatctggaaactctttcagtggcttttgctggtagc
agtgattgggggatgcagtgtgtgctgagtggctgctcaaagctgagaaagcttgagata
agggactgtccatttggcaatgaggcattgctctcgggtttggagaagtatgagtctatg
aggtcactctggatgtcagcctgcaatgtgacaatgaatgcttgtaggcggctggccaag
cagatgccaaggttgaatgttgaggtaatgaaggatgaagagagtgatgacagtcaggct
gataaagtgtatgtctaccgttccgttgcggggccaagaagggatgctccaccttttgtt
ctgactctctga
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