Vitis riparia (riverbank grape): 117923590
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Entry
117923590 CDS
T07274
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117923590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117923590
03019 Messenger RNA biogenesis [BR:
vri03019
]
117923590
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117923590
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117923590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
117923590
NCBI-ProteinID:
XP_034697842
LinkDB
All DBs
Position
10:complement(11500946..11546632)
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AA seq
674 aa
AA seq
DB search
MEDAEGVLSFDFEGGLDAAPGTAAAAAPLIQSDVTAAAAAPSSVVSAEPAPGGAPGRRSF
RQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDIKECN
MYKLGFCPNGSDCRYRHAKLPGPPPTMEEVFQKIQQLSSFNYGSSNRFYQNRNPYNQQTE
KSQILQGSNAVNLGTVAKSSTTEAINVQQQQVQPPQQQVSQTQMQNLPNGLPNQANKTAS
PLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRH
FQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLP
VKISRDCQELEPSIGEQLASLLYLEPDSELMAISLAAESKREEEKAKGVNPDSGGENPDI
VPFEDNEEEEEEESEEEEESFGQALGPAAQGRGRGRGIMWPPHMPLARGARPIPGMRGFP
PVMMGADGFSYSAVPPDGFAMPDIFGVGPRAFPPYGPRFSGDFTGPASGMMFPGRGQPGA
VFPASGYGMMMGPGRAPFMGGMGVPAAAPTRAGRPVGMPPMFPPPPPPNSQNTNRTKRDQ
RTPVNDRNDRYSGGSDQGRGQDMAGPDDETQYLQGLKSQQDDQFGGGNSFRNDESESEDE
APRRSRHGEGKKKR
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcggaaggagttctgagttttgacttcgagggcggcctcgacgctgctccc
ggcaccgcggccgcggccgcacctttgatacaatcagacgtgaccgccgcggcggcggct
ccatcttccgtcgtctccgcggagcccgctcctggcggcgcccccggcaggcgcagcttt
cggcagacggtgtgccggcactggctgcgcagcctctgtatgaaaggcgacgcctgcggc
ttcctccaccagtacgacaagtcgcgcatgcctgtttgccgattctttagattgtacgga
gagtgtcgtgagcaggactgcgtgtacaagcataccaatgaagatatcaaggagtgtaac
atgtacaagttgggtttttgtccaaatggttctgactgccggtataggcatgcaaagctg
cctggacctccacctaccatggaagaagtctttcagaagattcagcagttgagttctttt
aactatggctcctcaaacaggttttatcaaaaccgcaacccatacaaccaacaaacagaa
aaatctcagattctgcaaggttccaatgctgtcaatctaggtacagttgcaaaatcatca
accacagaggctattaatgtgcagcaacaacaagttcaaccaccccaacaacaggtcagc
cagacccagatgcaaaatcttcccaatggcctgcctaatcaggcgaacaaaactgcttca
ccacttcctcaaggaatatctaggtattttattgttaaaagctgcaaccgtgaaaatttg
gaattatctgtacaacaaggggtatgggcaacccaaaggagcaacgaggctaaactaaat
gaagcttttgacagtgttgagaatgtgattttgatcttttcagtgaaccggactcgccat
ttccagggttgtgcaaagatgacatctaaaattggtggatttgttggtggagggaattgg
aaatatgcacatggaactgcacactatggacggaatttctctgtcaaatggttaaagcta
tgtgaactgtcattccacaaaactcgccatttgaggaatccatacaatgaaaacctacca
gtgaagataagcagagactgccaggagttagagccgtcaattggtgaacagttggcttcc
ttactatatcttgagccagacagtgaacttatggcaatctcacttgcagcagaatcaaaa
cgtgaggaggaaaaagcaaagggagtcaatccagacagtggaggtgagaatccagatatt
gttccatttgaggacaatgaagaggaggaggaggaagaaagtgaagaagaggaggagagc
tttggccaggctcttgggccagcagctcaaggcagaggaaggggcagaggaatcatgtgg
cctcctcacatgccactagcacgaggagccagacctattcctggcatgcggggcttcccc
cctgtcatgatgggtgctgatgggttttcttatagtgctgttccaccagatggttttgca
atgccagatatttttggtgtgggtccccgtgctttccctccatatggtcccaggttttct
ggggatttcacaggtcctgcatctggcatgatgtttcctggccgcggtcaaccgggagct
gtctttccagcaagtgggtatgggatgatgatgggtccaggacgtgcaccattcatggga
gggatgggagttcctgcagcagccccaactcgagctggtcggccagttggtatgcctcca
atgttcccaccgcctccacccccaaactcgcagaacaccaatcgaactaaaagggatcag
aggacaccagttaatgaccgaaatgacagatacagtgggggctcagaccagggcaggggc
caagatatggcaggtccagatgatgagacacaatatctgcaaggattgaagtctcaacag
gatgatcaatttggaggtggaaatagctttagaaatgatgaaagcgaaagcgaggacgag
gctccaaggcggtcaaggcatggagagggaaagaagaagcggtga
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