KEGG   Vitis riparia (riverbank grape): 117923672
Entry
117923672         CDS       T07274                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    117923672
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:vri04121]
    117923672
   03036 Chromosome and associated proteins [BR:vri03036]
    117923672
Enzymes [BR:vri01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117923672
Ubiquitin system [BR:vri04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117923672
Chromosome and associated proteins [BR:vri03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     117923672
    Noncanonical PRC1 (PRC1.1)
     117923672
    Noncanonical PRC1 (PRC1.3/1.5)
     117923672
    Noncanonical PRC1 (PRC1.6)
     117923672
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-RING_4 zf-UDP zf-RING_6 zf-rbx1 zf-Nse zf-C3HC4_5 zf-RING_10 ZNF512_C2HC zf-RING_11
Other DBs
NCBI-GeneID: 117923672
NCBI-ProteinID: XP_034697975
LinkDB
Position
10:complement(17340115..17346350)
AA seq 433 aa
MPAQKRAFDAMEGDPLQRHHGNHHEPPEDGDGYESDRSPSWSNGEKDEFVIVKLAEIRKE
VQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDA
LIAALYPDIDKYEQEELAFHEEEKTRNKQIQASIAQTLRRQSEALGRKRTTAKATAAAFA
RRSQGNYRRGRRNYRATDLLGSEDDEDANGNDGGKDSSSAEDHSAEVKPKRSRRWGGVRF
SQPSSGAANADGGGDENDLEPNREAMGASAGLVGNSEILAWGKGGMRSHTRYGSVSGGNG
KNARSSRLSKLVDYLRNLEHNDDELDIHLMLVSLDEQRIPSLQTPYLCCRPTLSVRHLCQ
YVALQTPLLADEVEILVIKEQLSKINPSNSSSPDPCSDRLQVLEAQETLAVLKTMRNANQ
SHLLLAYRRKLSA
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgccagcacagaagcgagctttcgatgcaatggagggtgatcctctgcagcgccaccac
ggaaaccaccatgagccaccagaagatggggacggatacgaatctgatcgaagcccttcg
tggagtaacggagagaaggacgaatttgtcatagtaaaattggcagaaatacgcaaggaa
gtgcagtgtccaatttgccttgggatcatccggaagactcgaacagtaatggaatgcttg
catcgcttctgcagggaatgcattgacaaatccatgcgactgggtaacaatgagtgtcct
gcatgccgcacacattgtgctagtcgtcgttctttgagagatgatccaaactatgatgct
ctgatagcagccctatatccagatattgataagtatgagcaggaggaactggcttttcat
gaagaggagaagactcgtaataagcagatccaagcttctattgcccaaactttgcgaaga
caatcagaagcgcttggcaggaaaaggacaacagcaaaagccactgcggctgcatttgca
aggagatcccagggtaattatcgacgggggaggaggaactatcgagctactgatcttcta
ggatctgaggatgatgaggatgcaaatggtaatgatggaggcaaagattcatcttctgct
gaagatcattctgcagaagtcaaaccaaaaagaagcaggaggtggggaggagttcggttt
tctcagccttcctcgggagccgccaatgcagatggagggggtgatgaaaatgatttggaa
ccaaacagagaagccatgggtgcatctgcagggcttgttggcaactcagaaatacttgca
tggggcaaaggtggcatgcggagtcacactcgatatggcagtgtgagtggtggtaatggt
aagaatgcacggagcagccgcctctctaagttggtagattatctccgtaacttggagcac
aatgatgatgagttggatatccatctcatgcttgtttcactagatgaacaaagaataccg
agtctgcagacgccatacctttgctgcaggcccactctgtctgttagacacctctgccag
tatgttgctcttcaaaccccattgctagccgatgaagttgagatattggtgataaaagag
caactttccaagataaacccttcaaactccagcagccccgacccatgcagtgataggttg
caagttttagaagcacaagaaactctggcagtactcaagaccatgcgcaatgccaaccaa
agccatctgcttcttgcataccggagaaagttgtcagcttag

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