Vitis riparia (riverbank grape): 117923771
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Entry
117923771 CDS
T07274
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117923771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117923771
03041 Spliceosome [BR:
vri03041
]
117923771
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117923771
Spliceosome [BR:
vri03041
]
Complex B
Other components
Prp19-related factors
117923771
Complex C
117923771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21_C
ARM_TT21
PPP1R21_helical
Motif
Other DBs
NCBI-GeneID:
117923771
NCBI-ProteinID:
XP_034698105
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All DBs
Position
10:complement(18647859..18661035)
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AA seq
920 aa
AA seq
DB search
MAIAEELYPSQEDLLYEEELLRNQFSLKLWWRYLIARSDSPFKKRFLIYERALKALPGSY
KLWYAYLRERLEIVRNLPIKHSQYETLNNTFERALVTMHKMPRIWIMYLQTLTDQELLTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSKKGVPIETSLRVYRRYLKYDPTHIEDFIEFL
MNSGLWQEAAERLAGVLNDDQFYSIKGKTRHRLWLELCDLLTKHATDVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLTEKARDIFEEGMTTVVTVRDFSVIFDAYSQFEESML
AYKMENMDSDEEEDDVQDNDTDEEEDIRLDINLSVANFEKKILHGFWLHDFNDVDLRLAR
LEHLMDRRPELANSVLLRQNPHNVEQWHRRIKLFEGNPTKQILTYTEAVRTVDPMKAVGK
PHTLWVAFAKLYENHKDVANARVIFDKAVQVNYKTLDNLASVWCEWAEMELRHKNFKGAL
ELMRRATAEPSVEVKRKVAADGNEPVQMKLHKSLRIWTFYVDLEESLGTLESTRAVYERI
LDLRIATPQIIINYSLLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK
SKLERARELFEHAVEMAPAESVKPLYMQYAKLEEDFGLAKRAMKVYDQAAKAVPNNEKLS
MYEIYIARASEIFGIPKTREIYEQAITSGVPDKDVKTMCMKYAELEKSLGEIDRARGIFV
YASQLADPRSDADFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFLLPEYLMQKD
PKLNLDEAMDTLKQAGVPEDEMAALERQLVPTANNTAAKESSRKVGFVSAGVESQPDEGI
KVTANHEDIELPEESDSEDEKVEIAQKDIPNAVFGGLVRKREEADGDGDGDGDEDGAASK
DKDRDSQLGALERIKRQRQA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgattgcagaggaactgtaccctagccaggaggacctcctctacgaggaggaactg
cttcggaaccagttcagcttaaagctgtggtggagatacctcatcgctcgaagcgactca
cccttcaagaaacgattcttgatctacgagcgagccctcaaagccctccccggaagctac
aagctctggtacgcttacctccgcgaacgcctagaaattgttcgcaatctccctatcaaa
cactcacaatacgaaaccctcaacaataccttcgagcgtgcgctggtcactatgcacaag
atgccccgaatttggatcatgtacctccaaaccctaaccgatcaggagcttctcactcgg
actcgaagaacgttcgaccgtgctctctgcgcactaccggtgacccagcacgatcgaatt
tgggagccctatctcgtattcgtgagcaaaaagggtgtccccatcgagacctcgcttagg
gtttatcggcggtatttgaagtatgaccccacccacattgaggattttattgaatttctt
atgaattcaggtctttggcaggaggcagcagagaggttggctggggttttgaatgatgat
cagttttattcgattaagggaaagacaaggcataggttgtggttggagttgtgtgatttg
ttgaccaagcatgccacagatgtttcggggttgaatgtagatgcaataattcggggtgga
attaggaagtttactgacgaggttgggcggctgtggacgtcacttgcggattattacatc
aggaggaatttaactgagaaggcgagagatatttttgaagagggtatgaccacagtggtt
acagtgagggatttcagtgtgatttttgatgcttattcacagtttgaggaaagtatgctt
gcatataaaatggagaatatggatagtgatgaggaggaagatgacgttcaagataatgac
actgatgaggaggaagatattcgtttggatattaatctttcagtggcaaattttgagaaa
aagatccttcatgggttttggttacacgattttaatgatgttgatttaagattggctcgg
ttggagcatctcatggatagaaggccagagttggcaaatagtgtccttctccggcaaaat
ccccataatgtggagcaatggcaccggaggattaagctatttgagggaaatcctacaaag
cagatattgacttacactgaggctgtgagaacggttgatcccatgaaagcagtgggaaag
cctcatactttatgggttgcttttgctaagttatatgagaaccacaaagatgttgccaat
gccagagttatttttgataaggctgtgcaagtgaattacaaaactttggataatctggct
agtgtgtggtgtgagtgggcagaaatggaattgaggcacaagaattttaaaggagcacta
gagctgatgaggcgtgctactgcagaaccatctgttgaggtcaagcgaaaagtggctgct
gatgggaatgagcctgtgcagatgaaactgcacaagtccttgcgaatttggacattttat
gttgatttggaagaaagcctgggaactttggagtccacacgtgctgtttatgagcggata
ttggatttaagaatagccactccacaaattataatcaactattcattgcttttggaagaa
cataaatactttgaggatgctttcaaggtgtatgaaagaggtgtaaagatatttaaatac
cctcatgtaaaggatatatgggtcacatatctgtccaaatttgtgaaaaggtatgggaaa
tccaaattggaacgtgcaagagagttgtttgagcacgctgttgaaatggctccagctgaa
tctgtgaagcctttgtatatgcaatatgctaagctggaagaggactttggtttagctaag
cgagctatgaaggtttatgatcaagctgctaaggcagttcctaacaatgaaaaattgagc
atgtatgaaatttacattgcacgtgcttctgaaatatttggcattccaaagacaagagaa
atatatgagcaggcgatcacatccggtgttccagacaaagatgtgaagacaatgtgcatg
aagtatgcagagctggagaagagtttgggtgaaattgaccgtgcccgtggtatatttgta
tatgcatctcaactggcagatccacgatcagatgcagatttttggaataagtggcatgag
tttgaggtccagcatggtaatgaagacacctttagagaaatgcttcgaatcaaacgaagt
gtctcagctagctacagccagacacactttctacttccagaatatctgatgcagaaggat
ccaaagctgaacttggatgaagcaatggacacattgaagcaagctggggtccctgaagat
gaaatggccgccctagaaaggcagttagtgccaacagccaataacactgctgctaaagag
agcagtcggaaagttggttttgttagtgctggagtggaatcacagccagatgaaggaata
aaagtaactgcaaatcatgaagacattgagctgccagaagagagtgactcggaagatgaa
aaggtggagattgcccagaaggatattccaaatgcggtgtttggaggtttggtccggaag
agggaagaagctgatggggatggggatggggatggggatgaggatggagctgccagtaaa
gataaagaccgagacagccaacttggtgcactggagagaataaaaagacaaaggcaggcc
tga
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