Vitis riparia (riverbank grape): 117923938
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Entry
117923938 CDS
T07274
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117923938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117923938
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117923938
mRNA degradation factors
5'-3' decay
Decapping complex
117923938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
117923938
NCBI-ProteinID:
XP_034698335
LinkDB
All DBs
Position
10:complement(19812348..19828570)
Genome browser
AA seq
1373 aa
AA seq
DB search
MANQAGGPSDLHKLFKPSSNPGPATIIQPSPSSPSSNLQPYATPSPSTSSSSYPPPTGPL
PFHTHYLPYQPQPQPLPISYQTSQQQPHLPSPSPNSGARLMALLTTPSNPPMPFPATAPP
EFSMPTTTPINLVTPQPPPLRLLSNKFPKGRHLIGDRVVYDVDVRLQGEVQPQLEVTPIT
KYVSDPGLVVGRQIAVNRTYICYGLKLGNIRVLNINTALRALLRGHTQRVTDMAFFAEDV
PLLASASIDGLVFIWRINEGPNEDDKAHITGKIVIAIQIVGGGASVHPRVCWHSHKQEIL
VVAIGNRILKIDSTKVGKGEVFSAEEPLKCPIDKLIDGVQFVGKHDGEVTELSMCQWMTT
RLASASTDGTVKIWEDRKLVPLAVLRPHDGQPVNSVTFLTAPHRPDHIILITAGPLNREV
KLWASASDEGWLLPSDIESWQCTQTLDLRSSAEPRAEDAFFNQVVALPHAGLFLLANAKK
NAMYAVHIEYGPYPAATRLDYIAEFTVTMPILSLTGTSDSLPDGEHVVQVYCVQTHAIQQ
YALDLSQCLPPPLENLELEKTDSSTSCGFNTANSAACDTLELSHGSKHIEMSVGGAPPLP
SILSSSSENGPIASHPVNLASSEVTSLRETATSGMESKSSALPSSISSENIHAASPPLPL
SPRLSGKLSGFRSPSNSFDPSPPLSNHGGDQPILDYSIDRRMDTVRENFADAPPSGENLR
KDEKNIAQNDISMVPNPPIMFKHPTHLITPSEILSASSESSQITQGMNVGEAKIHDMVVN
NDPESIELEVKVVGETGIPGISKNDELECQRESHVIVAEKKEKSFCSQASNLSIQMTRDC
CVETYTIEGARQVSDANVTAAVDLSPNTADEDVQDSTRDVSAKIGESTTPMIVPQSSIPS
KGKKQKGKNSQVSGPSSPSPSPFNSTDSSNEPSSSSSPPSMDAAFSQLFSMQEMLDQLVN
MQKEMQKQMNVMVAVPVTKESRRLEASLGRSMEKVVKANSDALWARFQEENTKHEKLDRD
RMQQLTNLITNCINKDLPSMLEKTIKKEIAAVGPAVARAITPVIEKTISSAISESFQKGL
GDKVVNQLEKLVNSKLESAMARQIQIQFQTSGKQALQDALRSTLEAAVIPAFEIACKTMF
DQVDSTFQKGLIKHTSGVQQQFESTHSTLAVALRDAINSASSITKTLSGELADGQRQILA
IAAAGANSKAVNPLVTQLSNGPLAGLHEMAEAPLDPTKELSRLISERKFEEAFTGALHRS
DVSIVSWLCSLVDLQGILSLVPLPLSQGVLLALLQQLACDISKETPRKLAWMTDVAVAIN
PADPMIALHVRPIFEQVYQILGHQRNLPTTSAAEASSIRLLMHVVNSVLLSCK
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaagcgggaggaccctcggatttgcacaagctcttcaaaccctcctccaat
ccgggtcctgctactataatccaaccctcgccttcatccccaagctcaaatctccaaccc
tatgccacgccttctccttcaacttcatcttcttcttaccctcctcccactgggccttta
ccatttcacacccactacctcccttaccagccccagccccaacccttacccatctcgtat
caaacttcacagcaacaaccccacctcccttcccctagccctaattcgggtgcccgattg
atggctcttcttaccacaccctccaatcctcccatgccctttcctgccacagcccctcct
gaattttccatgcccaccaccactcccatcaatttggtcacccctcagccccctcccttg
cgattgctcagcaataaattccccaagggccgccatctcattggcgaccgtgttgtttac
gatgttgatgttagattgcaaggcgaggttcagccccagctggaagtcactcccatcacc
aagtatgtctccgatcctggtcttgtcgtgggtcgtcagattgctgttaacaggacctat
atatgctacggcctcaagcttggaaacataagggttcttaatatcaatactgcattgaga
gctttgcttcgcggccacactcagagggtaacagacatggctttttttgctgaggatgtt
ccccttctggccagtgcaagtattgatggcctggttttcatatggaggatcaatgaaggc
ccgaacgaggatgataaggcccacattactggaaaaattgttattgccattcaaatagta
ggaggaggggcatcagtgcatccacgagtgtgttggcattctcacaaacaagaaattttg
gttgttgcaattgggaatcgtatcctgaaaattgattccacaaaagtaggaaagggtgaa
gtgttttctgcagaggagcctcttaaatgtcccattgataaactaatagatggggttcag
tttgttggtaaacatgatggtgaagttacagagctgtcaatgtgccaatggatgactacc
cgtttagcttcagcttcaacagatggcacggtgaagatttgggaggaccgaaaactggta
ccccttgcagtactgaggccacatgatggtcaacctgttaattctgttacattcttgaca
gctcctcaccgtcctgatcatattattcttatcactgcaggaccactgaatcgggaagtg
aagttatgggcctcagcaagtgatgaaggatggctgttgcctagtgatattgaatcgtgg
cagtgtacgcagactttggatttaaggagttcagctgaacccagggctgaggatgcgttc
tttaatcaagttgtagcattgccacatgctggtctttttctactggcaaatgcaaagaaa
aatgctatgtatgctgtgcacatagaatatgggccttatcctgctgcaactcgcctggat
tacatagctgagtttacagtcactatgccaattttgagtcttactggaacaagtgatagc
ttaccagatggagaacatgttgtacaggtctattgtgtccaaacacatgctattcagcaa
tatgccttggacttatcacagtgcctgccaccacctctagagaacttggaattggagaaa
actgactccagtacttcttgtggtttcaacactgctaattctgctgcttgtgatactttg
gaattatctcatggaagtaaacatattgagatgtctgtaggtggtgcaccccccttgcca
tcgatactttcaagcagctctgaaaatggtcctatagctagccatcctgtaaacttggct
tcttctgaggtcacaagcttgcgagaaactgctacttcaggtatggagtctaagtcaagt
gctttaccatcgagtatcagttctgaaaatattcatgctgcatcacctcctcttcctttg
agtccaagattatctggaaaattatctggttttagaagtccatcaaatagctttgacccc
agtccaccactcagcaatcatggtggtgaccagccaattcttgattattcaattgacagg
agaatggacactgttagagaaaacttcgctgatgcacctccttcaggtgagaatttgagg
aaggatgaaaaaaatattgcacaaaatgatatttcaatggttcctaatcctcctataatg
tttaagcatcctactcatctgataactccatcagagatattgtctgcttcatcagagagt
tctcagattactcagggtatgaatgtgggagaggcaaaaatccatgatatggttgtcaac
aatgatccagaaagcattgagttagaggttaaagttgtaggtgagacaggaattccagga
atcagcaaaaatgatgagcttgagtgtcagagagaatcccacgttattgttgcagagaaa
aaggagaaatccttttgctcacaggcctccaatcttagcattcaaatgactagagattgc
tgtgtggaaacttataccattgagggggctcggcaggtcagtgatgctaatgttactgca
gcagtagacctatctcccaacactgctgatgaagatgtccaagattcaacaagagatgtg
tctgcaaagattggtgaatcaactactcccatgatagtgccacaatcctccatcccatcc
aaggggaaaaaacagaaaggaaaaaattctcaagtttctggtccatcaagtccctctcct
agtcctttcaactccacagattcatccaacgaaccaagtagcagttcaagtcctccatct
atggatgctgctttttctcagttattttctatgcaggagatgctggaccagttggtgaac
atgcaaaaggagatgcagaagcagatgaatgtgatggtggctgttcctgttaccaaggaa
agtagaagactggaggcatcattaggccgaagtatggagaaggttgttaaggccaacagc
gatgccctatgggctcgattccaagaagaaaatacaaaacatgagaagttagatcgagac
cgtatgcagcagcttacaaatctgatcaccaattgtataaacaaggacttgccatccatg
ttagagaaaacaataaagaaggaaatagctgcagtaggaccagctgtagctcgtgcaatt
actccagttatagagaaaaccatttcttcagctatttctgaatcattccagaaagggttg
ggtgataaggtggtgaatcaactagagaaattagttaactcaaaacttgaatctgcaatg
gctaggcaaattcaaatacagtttcaaacttctggcaagcaagctcttcaagatgcattg
aggtctactttggaagctgcagttattccagcatttgagattgcatgcaaaaccatgttt
gatcaagttgattctacatttcagaaggggcttatcaaacatacatctggtgttcagcag
cagttcgagtctacacattcaaccctggctgttgctttgagggatgcaattaattcagca
tcatcaatcacaaaaaccctaagcggagagttggctgatggccaacgccagatcctagct
attgccgctgcaggtgcaaattcaaaagcagtgaatcccttggttacacagttgagtaat
gggccattggctggtctgcatgagatggctgaagcacctttggatccgaccaaagaacta
tccagattgatatctgagcgcaaatttgaggaagcattcactggagctctgcacagaagt
gatgtctcaatagtatcatggttatgttctctggttgatttgcaggggattctgtcattg
gtacctctacctctaagccaaggagttctgctggccctcctccaacaattggcctgtgac
atcagcaaggaaacacccagaaagcttgcatggatgacagatgtggctgttgccataaac
cctgcagatccgatgatcgcactgcatgtgcggccaatcttcgagcaggtttatcagata
ctgggccatcagcgaaacctacccacaacctctgctgcagaagcatcaagcatccgcctt
ctcatgcatgtcgtaaactctgttttgctgagctgtaaatga
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