Vitis riparia (riverbank grape): 117924071
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Entry
117924071 CDS
T07274
Name
(RefSeq) DNA damage-binding protein 1 isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03420
Nucleotide excision repair
vri04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117924071
09124 Replication and repair
03420 Nucleotide excision repair
117924071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
vri04121
]
117924071
03400 DNA repair and recombination proteins [BR:
vri03400
]
117924071
Ubiquitin system [BR:
vri04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
117924071
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117924071
TCR (transcription coupled repair) factors
Cul4-CSA complex
117924071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
HTH_Mga
Motif
Other DBs
NCBI-GeneID:
117924071
NCBI-ProteinID:
XP_034698513
LinkDB
All DBs
Position
10:complement(12019404..12056200)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG
RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAENSEVITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWAQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC
SASLFKAIPIRPSITKAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGET
SIASTISYLDNAFVYVGSSYGDSQLIKIHLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDPHDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVYDQLVQVTSSSVRLVGSTSRELR
NEWNAPSGYSVNVATANATQVLLATGGGHLVYLEIGDGTLTEVKHAQLEYDISCLDINPI
GENPNFSQLAAVGMWTDISVRIFSLPDLNLITKEYLGGEIIPRSVLLCSFEGIPYLLCAL
GDGHLLNFLLNMSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGDLTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAICSLKYNQSSTEDSEMHFIRLLDDQTFEFISTYPLDTFEYGCSILSCSFSDD
SNVYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMLRDDGTRELQSESGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNIFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYVFLEKLQANLRKV
IKGVGGLSHEQWRSFNNEKKTVDAKNFLDGDLIETFLDLNRTRMDEISKAMGVSVEELCK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtggaattatgttgttacggctcacaagcccaccaatgttacgcactcctgc
gtcggcaatttcactggccctcaggagctcaacctcatcattgcgaaatgcacccgtatt
gagattcatttgcttacacctcagggtttacagcctatgttggatgtgccaatatatggg
agaatagcaacacttgagctttttcgcccccatggcgaagcacaagattttctattcatc
gcaactgaaagatacaagttttgtgttcttcaatgggatgcagagaattctgaggttatc
acaagagcgatgggagatgtctcagatcgtataggtcgtcctacagacaatggacagatt
ggaattattgatcctgattgcagattaattggacttcatttatacgatggattatttaag
gtgattccgtttgataataaaggacagctgaaggaggcgtttaatattaggcttgaggag
cttcaagttttggatatcaagtttctttatggatgttcaaaaccaactattgttgttctc
taccaggataacaaagatgcacgtcatgttaaaacatatgaggtggctttgaaggataag
gattttgttgagggtccttgggctcagaacaatctagacaatggggctgatttgctaata
ccagtacccccacctctttgtggtgtcctcattattggagaagaaacaattgtatattgc
agtgccagtttattcaaagcaatcccaatccgaccttcaattacaaaggcctatgggagg
gttgatgctgatggttctagatacttacttggggatcatgcggggcttcttcacctactt
gttataacccatgagaaagaaaaggttactggactcaaaattgagctgttaggggaaact
tctattgcatcaacaatttcatatcttgacaatgcatttgtctatgtcggctcaagctat
ggagattcacagctcataaagatacatctacaacctgatgccaaaggttcatatgtggag
gttttagagaggtatgtcaatctgggtccaattgttgacttctgtgtggtagacctggag
aggcaaggccaaggtcaggttgtaacttgctcaggggcttataaagatggttctcttcgc
attgttcgaaatggaataggaatcaatgaacaggcatcagtggaacttcaaggcatcaaa
ggaatgtggtcattgagatcttctactgatgatccacatgacaccttcttggttgtaagc
tttatcagtgagacacgaatattggcgatgaatcttgaagatgagttggaagaaactgag
atagagggtttctgttctcaagtgcagactttgttctgccatgatgctgtttatgatcaa
ctagtacaagtcacttcaagctcagtaagactggtcggctctacatctagagagctgcga
aatgaatggaatgctccatcagggtattcagttaatgttgctactgctaatgccacccag
gttttactggccactgggggtggccatctagtttacctggaaattggtgatgggacattg
actgaagtgaaacatgctcagttagagtatgacatctcatgccttgacataaatcccatc
ggtgaaaatcccaactttagtcagttagctgctgttggaatgtggacagatattagtgtt
aggatattttcacttcctgacctgaatctcatcacaaaagagtatttgggtggagagata
atacctcggtccgtacttttgtgttcctttgaagggataccttacttgttgtgtgcactg
ggagacggtcatttgttgaactttttactgaacatgagtactggtgagttaacagatagg
aaaaaggtgtctcttgggacacaacctatcactcttcgaactttctcatccaagaatact
acacatgtatttgctgcatcggataggcctacagtgatttatagcagtaacaagaagcta
ctttacagcaatgttaatttgaaagaagtcagccacatgtgccctttcaattctgctgct
tttccagatagccttgcaattgccaaagaaggtgatcttacgatcggtaccattgatgat
atccagaagcttcacatccgctctatcccacttggggagcatgctcgccgcatctgccat
caggagcagtctcggacctttgccatttgtagtttgaagtataaccaatctagtacagaa
gattctgaaatgcactttatccgtttgttagacgaccaaacctttgagttcatatctact
tatccacttgacacgtttgagtatggttgctctatccttagctgctccttctctgatgat
agtaatgtatattattgcgttgggaccgcatatgttttaccagaggaaaatgagccaacc
aagggccgaatactggtcttcatagttgaggatgggaagttacagctaattgctgagaag
gaaaccaagggggctgtttattctttgaatgccttcaatggtaaactacttgctgctatc
aatcaaaaaattcagttgtacaagtggatgctccgggatgatggtacccgtgaattgcag
tctgaatctggacaccatggacacattcttgccctctatgtacaaacacggggagatttc
attgttgttggtgatctgatgaaatcaatctctttgttaatttataagcatgaggaaggt
gccattgaagagcgagcccgtgactacaatgcaaattggatgtcagctgtcgagattctt
gatgatgacatttaccttggtgctgagaataacttcaacatcttcacagtgcgaaagaac
agtgaaggtgctactgatgaggagcggggtcgtcttgaagttgttggtgagtatcatctc
ggagaatttgtcaaccggttcaggcatggttcccttgtcatgcgcttgccagattctgat
gtgggtcagataccaactgtaatttttggcactgttaatggcgtaattggggtcatagca
tcacttccacacgatcagtatgtcttcttggagaagcttcaggcaaacttgaggaaggtg
ataaagggtgtaggagggttgagccatgagcagtggaggtcattcaacaatgagaagaaa
actgtagatgctaaaaatttcttggatggagatctgatcgagacattccttgatcttaat
cgtactcgaatggatgaaatttcgaaggcaatgggcgtttcagtggaggaactttgcaag
agagtagaagagttgacgaggttgcattga
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integrated database retrieval system
