Vitis riparia (riverbank grape): 117924106
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Entry
117924106 CDS
T07274
Name
(RefSeq) sister chromatid cohesion protein PDS5 homolog A
KO
K11267
sister chromatid cohesion protein PDS5
Organism
vri
Vitis riparia (riverbank grape)
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vri03036
]
117924106
03400 DNA repair and recombination proteins [BR:
vri03400
]
117924106
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Other sister chromatid cohesion factors
117924106
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Shu complex and associated proteins
117924106
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDS5
PTM_DIR17_Tudor
HEAT_GCN1_C
TPR_DNAAF5
SpxO
LBR_tudor
Motif
Other DBs
NCBI-GeneID:
117924106
NCBI-ProteinID:
XP_034698557
LinkDB
All DBs
Position
10:complement(20686835..20708694)
Genome browser
AA seq
1699 aa
AA seq
DB search
MDQKRQQQLRDVGSKLENPPATKDALVKLLKQAATCLTELDQSPSASILESLQPSLNAIV
KPELLKHQDRDVKLLVATCICEITRITAPEAPYSDDVLKDIFRLIVSTFSGLSDTNGPAF
GRRVVILETLARYRSCVVMLDLECDDLVNEMFRTFFSVARDDHPESVLTSMQTIMVVLLE
ESEDVREDLLFSILSILGCNKSDVTTAARKLAMNVIEHCAAKLEPGIKQFLVSSISGDNR
SMNSEIDYHEVIYDIYRCAPQILSGVTPYLTGELLTDNLDTRLKAVKLVGDLFALPGLAI
SEAFQPIFSEFLKRLADRVVGVRMSVLEHVKSCLLSNPSRAEAPQIISALCDRLLDYDEN
VRKQVVAVICDVACHSLSSIPVETAKLVAERLRDKSVLVKKYTLERLAEIYNLYCLRCCD
GSLNPSEFDWIPGKILRCFYDKDFRSDTIESVLCETLFPTEFSIKDKVKHWVRVFSGFDK
VEVKALEKILEQKQRLQQEMQRYLSLKQMHQDGEGPEIQKKVTYCLRIMSRLFADPAKAE
ENFQILDQLKDVNIWKILSSLIDPKTSFHQACSSRDDLLRILGEKHRLYDFLGTLSLKCS
YLLFNKEHVKEFLLEAAIQKSSGNTQYIQSCMNVLVVLARFSPLLLSGAEEDLVHLLKDD
NEIIKEGVLHILAKAGGTIREQLAVTSSSVDLILERLCLEGSRRQAKYAVHALAAITKDD
GLKSLSVLYKRLVDMLDKKTHLPAVLQSLGCIAQTAMPVFETRESEIEGFIKCEILKCSS
KAEDNAKACWDDRSELCLLKIFGIKTMVKSYLPVKDAHLRLGIDDLLEILKNILLFGEIS
EDIESSAVDKAHLRLAAAKAILRLARHWDHKIPVGVFHLTLKTSESTFPQAKKLFLSKVH
QYIKDRLLDAKYACAFSFNIVGSQPSEFEEDKHNLGDIIQMYHQTKARQLSTQSDASSLA
YPEFILPYLVHALAHHSCPDIDECKDVKAFEPIYWKLHIFLSMLVHGDEDTKAEAGADKE
KEGISAIISIFQSIKLSEDIVDAGKSKNSHALCDLGLSIIKRLVQKQDDVQGLTSSITLP
PMLYKLCEKKEGDDSVASEGQTWLADESVLTHFESLKLETNGMVDEEGVINDNDRDGNEL
PLGKMIKRLKSRGTKSRKVKNKKSSPAKKKHAENDVDILKMVREINFDAMGMSSKFESSN
GHEYSSHRKAKMGQKHEKKKRRRSGEVTPVTVPKRRRSSSAKSSLPRSASKGSVRALRDN
LHQAGVSSFQSTDMDSEVHTDSEDKASALKNIGEPAESDLLVSCFRRNSNFLSKRKGKGS
DKGDNDEARIVGEDEDHDLREPNVPMETDKIHTASNVKSPTGSTKKRKRRSIAGLAKCTS
KEGRSHAADLIDCRIKVWWPMDKQFYEGVVKSYDPKARKHVVLYDDGDVEVLRLGRERWE
LVENVAKPAKKLNSSKTPPSKGVSADQKNKFLNGSQQNKKPIKSSSSKVRGKRTPRKNLK
HVEKAGLESNTATEFCEVESRGSSDVSNPEPNAMSKVEDMNSGDSEEKLNERSEKGLTGG
EESDKDEKSVSEGKQVEDKEKRPSDTEESEKEEKPYSEGRPVEDKEGICQDAQESPEKRE
SYSEERKPEESKRDSPSGEEANKEEQSDSEETQAENLESNPTDVDKSSKKTSDPSNTEDA
KNSDDEPLSMWKRRVGKPV
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atggatcagaagcgtcagcagcagctcagggacgtcggatcgaagctcgagaaccctccg
gccaccaaagacgctctcgttaagctcttaaagcaagctgcaacatgtttaactgagttg
gatcaatcaccgtcagcatcaattttggaatcactgcagccttctctgaatgcaattgtc
aagccagaactgctgaaacaccaagatagggatgttaagcttctcgttgcaacatgtatt
tgtgagataacccggattacagcacctgaggctccttatagtgatgatgttctgaaggat
atctttcgcttgattgtgagcacttttagtgggttaagtgatacaaatggtccagcattt
ggaaggagagttgttatcttggagactctagcaagatataggtcatgtgttgtgatgttg
gatcttgagtgtgatgatctagtgaatgaaatgttccgtacatttttttctgttgcaagg
gatgatcatcctgaaagtgtcctaacatcaatgcaaactatcatggttgttctcttggaa
gagagtgaggatgttcgggaagatcttttattttctatcctgtctattttaggttgcaat
aagagtgatgttacgacagctgcaaggaagcttgctatgaatgttatagagcattgtgca
gcaaaacttgaacctggcataaaacagtttctggtgtcatcgatttcaggagataacagg
tcgatgaacagcgaaattgactaccatgaagttatctatgacatttatcgttgtgctcct
cagatcctatcgggagttactccctacctcacaggagagctattgacagataatttagat
actcgtttgaaagcggtgaaattagttggagacctgtttgctttgccgggtttggctatt
tctgaagcatttcaacctatattttcggagtttttgaagaggttggctgatagagtagtt
ggggttcgtatgtctgtccttgaacatgtcaaaagttgtctgctgtccaatccttctaga
gccgaggctcctcagatcatttctgcactttgtgaccggctgttagattatgatgaaaat
gttcggaaacaagttgttgctgtaatttgtgatgtggcctgtcactccctaagttccatc
ccagttgaaactgcaaagctagttgctgagcgtctccgagacaaatctgtacttgttaaa
aagtataccctagagaggctggctgagatctacaatctttattgcttgagatgttgtgat
ggctcactgaatcccagtgaatttgattggattcctgggaagattctaagatgtttttat
gataaagatttcagatcagatacaattgaatcggtcctgtgtgagaccctgtttccaacc
gaattctcaatcaaagataaggttaaacattgggtaagagttttctcagggtttgacaaa
gttgaggtcaaggctcttgaaaagatactggagcagaaacaaaggttgcaacaagagatg
cagaggtatctgtctcttaagcagatgcatcaggatggtgaaggtcctgagatccagaaa
aaggtcacctactgcctcagaattatgtctcgcttgtttgctgaccctgcaaaggctgag
gagaattttcagatacttgatcaattaaaagatgttaacatttggaagattttatcaagt
ttaattgatccaaagactagtttccatcaagcttgttcctctcgggatgatttgcttagg
attcttggtgagaaacaccgtctgtatgatttcttaggcacactctctttgaagtgctct
tatttacttttcaacaaggagcatgtgaaagaattccttctggaggctgccattcaaaaa
tcttctggaaacacccaatatattcaatcttgcatgaatgtattagtggttcttgcacgc
ttcagtccgttgctactgagtggggctgaagaagatctagttcatcttctgaaagatgac
aatgaaataataaaagaaggtgttttacatattctagcaaaagctggtggaaccatccga
gaacaactggctgtgacatccagttcagtggatcttatattggaaaggctatgtctagaa
ggtagtcggagacaagccaagtatgctgtacatgcgcttgcagcaataacaaaggatgat
gggctcaagtcactctctgttttatacaagaggcttgtggatatgctggataagaagacg
catttgcctgctgtcctacagtctcttgggtgcatagcacagactgcaatgccagttttc
gagactagagagagtgagattgaaggatttataaaatgcgaaattctaaagtgtagtagt
aaagcagaagataatgcaaaagcatgttgggatgatagaagtgagctttgtctattgaag
atatttggaatcaaaacaatggtcaagagctacttgcctgtcaaagatgcacatcttcgg
cttgggattgatgaccttctggaaatccttaaaaacattcttttgtttggagagatttcg
gaagatatagaatcaagtgcagttgataaagcccatttgaggcttgcagctgcaaaggca
attcttcgtctggctaggcactgggatcataagatacctgttggtgtctttcacctgacc
ttgaaaacatcagagagtacttttcctcaagcaaagaaactgttcctgagcaaagttcat
caatacataaaggaccgccttttggatgcaaaatatgcttgtgccttctcatttaacatt
gttggatcccaaccatctgagtttgaagaggacaaacacaacctgggtgatatcatccaa
atgtatcatcaaaccaaggcacggcaactttctacacagtctgatgcaagctccctggct
tatcctgaattcatactcccatacttggtccatgcccttgctcatcattcttgtcctgat
atcgatgaatgcaaggatgtcaaagcatttgaaccaatatactggaaactgcatatattt
ctttctatgctggtgcatggagatgaagataccaaggcagaagctggcgctgacaaggaa
aaggagggtatttctgcgataatctctatctttcaaagtatcaagctctcagaagatata
gttgatgcaggaaagtcaaagaattcccatgctctttgtgaccttgggctgtcgatcatc
aagcggttagttcaaaaacaggatgatgttcaagggttgacttcatcaatcactctacct
ccaatgctgtacaaactgtgtgaaaagaaagagggggatgattctgtggccagtgaaggg
caaacgtggctggctgatgagagtgtgttgacccactttgaatctcttaagttagaaact
aatggaatggttgatgaagaaggggtcataaacgacaatgatagagatggaaatgaattg
ccgctggggaaaatgataaaacgcttgaaatctaggggaaccaaatcaagaaaagtgaag
aacaagaagtcttcaccagctaagaagaaacatgctgaaaacgatgttgatatcttgaaa
atggtgagggaaataaattttgatgctatgggaatgtctagtaaatttgaatcaagcaat
ggtcatgaatattcgtcacatagaaaagcaaaaatgggtcagaaacatgaaaagaagaaa
agaagaagatccggtgaagtaacaccagttacagtacctaaacggcgtagatcatcatct
gctaaatcgtctctcccaaggagtgcttcaaaaggttctgtaagagctttgcgtgataat
ttgcatcaggcaggggtatcttcatttcagtccactgatatggattcagaagttcacact
gattcagaggataaagcgtctgcattgaaaaatataggcgaacctgctgagtcagacttg
ttggtatcatgcttccgaaggaattcaaacttcttatcaaaacgcaaaggaaaaggctct
gacaagggtgataatgatgaggctcgtattgttggagaagatgaagatcatgatttgagg
gagcctaatgtgccaatggagactgataagatccatacagcaagtaatgtcaagtccccc
acaggatctaccaagaagcggaaaagaagaagcattgcaggattggcaaagtgcacatca
aaggaagggaggagtcatgctgcagacttgattgattgcagaataaaagtttggtggcca
atggataagcagttttatgaaggtgtagtgaaatcttatgaccctaaagcaagaaaacat
gtggtattatatgatgatggggatgtggaagtgcttcgtttaggcagggaacgctgggag
cttgttgaaaatgttgcaaagcctgctaagaagttgaattcatcaaagaccccaccttct
aaaggagtatcagctgaccagaaaaataagtttttgaatggttcacaacagaacaagaaa
ccaattaaatcctcatcctctaaagtaagaggcaaaagaactccaaggaaaaatttgaag
catgtagagaaggctgggttagagagtaacactgctactgaattttgtgaagttgagagc
agagggagctctgatgtatcaaatccagaacctaatgcaatgtccaaagttgaagatatg
aactcaggtgattcagaagagaaactgaatgaaagatcggagaagggtcttactggtggg
gaagaatctgacaaggatgagaaatcagtttcggaagggaaacaggtggaggataaggag
aagaggccaagtgatacagaggaatcagagaaggaagaaaaaccttattctgaggggaga
cctgttgaggataaggagggcatctgccaagatgctcaggaatcccctgaaaaaagggaa
tcttattcagaagagagaaaaccagaagaatcaaaaagagactcaccttctggtgaggaa
gccaacaaagaagagcaatcagattctgaagagactcaagcagaaaatttggagagtaat
ccaacagatgtggataaatctagcaagaaaacttcagatccttcaaacaccgaggatgcc
aaaaattctgatgatgagcctcttagcatgtggaagcgtcgagtaggaaaaccagtctag
DBGET
integrated database retrieval system
