Vitis riparia (riverbank grape): 117924507
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Entry
117924507 CDS
T07274
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117924507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117924507
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
117924507
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
117924507
NCBI-ProteinID:
XP_034699020
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Position
11:complement(18386500..18391365)
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AA seq
217 aa
AA seq
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MNYEMGSSADGDRSSSGDSSNHVLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSR
YGSRTCVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNE
DGDGSDWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLK
LLAIPLCQLHENDKTYGPIIAGIPQLLSKFSFNIIDS
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atgaattatgaaatgggttcatctgcagatggtgatcggagcagcagcggtgacagtagt
aatcatgttctggacatttaccctctcagttgttactactttggttctaaagaccccctt
ctcctcaaggaggaaaccttggctgatcgaattctcagaatgaaatccaactattctaga
tatgggtcgaggacttgtgtggtggcagttattctggttgagttgttcaagcatcctcat
ttgttgctgttgcaagtgaaaaattccttctttaagcttcctggtggtcgcttaagacca
ggtgaatcagagattaatggattgaaacgtaagttatcacgcaagctttctgtcaatgaa
gatggagatggatctgactgggaggtaggagaatgtcttgggatgtggtggaggcctgac
tttgaaacattgttgtatccatacttaccacctaatgtaaaaaatcctaaggaatgtaca
aaactctttcttgtaaagttaccaccaagtcggaagttcatcgtaccaaaaaacctaaaa
ttgcttgcaattccattgtgccagctccatgaaaatgacaagacatatggaccgataata
gcaggaatcccgcagctgctgtctaaattttccttcaacatcattgattcttga
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