KEGG   Vitis riparia (riverbank grape): 117924979
Entry
117924979         CDS       T07274                                 
Name
(RefSeq) SART-1 family protein DOT2-like isoform X1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
vri  Vitis riparia (riverbank grape)
Pathway
vri03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vri00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117924979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vri03041]
    117924979
   04121 Ubiquitin system [BR:vri04121]
    117924979
Spliceosome [BR:vri03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    117924979
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    117924979
Ubiquitin system [BR:vri04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    117924979
SSDB
Motif
Pfam: SART-1
Other DBs
NCBI-GeneID: 117924979
NCBI-ProteinID: XP_034699633
LinkDB
Position
11:5049634..5065095
AA seq 944 aa
MDMDWSEPKPERSDELRDRDDSPTRDYHDGAYDDLEETGIEKSSKHRSKDRKKSRREEKD
HRGKDRERSKAGDGLKEREKETKDLEKDRVTSRERRKEDRDEREKDRNRDKVREKDYDRE
KYRDKERERDKDRKDRGKEKEREREREVDKESDRGRDKERGKEKNRDRDKEREKERDRAK
DRDREKEKEKSKDREKERENDKDRDRDAIDKEKGKERIRDKEREADQDRDRYKDRDKGSR
KNRDEGHDRSKDGGKDDRLKLDGGDNRDRDVTKQGRGSHHDEDDSRAIEHEKNAEGASGP
QSSTAGLQERILRMKEERVKRQSEGSSEVLAWVNRSRKVEEQRNAEKEKALQLSKIFEEQ
DNIDQGESDDEKPIRHSSQDLAGVKVLHGLDKVIDGGAVVLTLKDQDILANGDINEDVDM
LENVEIGEQKRRDEAYKAAKKKTGIYEDKFNDEPGSEKKILPQYDDPVTDEGLALDASGR
FTGEAEKKLEELRRRLQGVSTNNRFEDLNSYGKNSSDYYTHEEMLQFKKPKKKKSLRKKE
KLNIDALEAEAVSAGLGVGDLGSRNDGKRQSIREEQERSEAEMRNSAYQLAYAKADEASK
ALRLDQTLPVQLEENENQVFGEDDEELQKSLQRARKLVLQKQDEAATSGPQAIALLASTT
TSGQNVDNQNPISGESQESRVVFTEMEEFVWGLQLEDEAHKPDGEDVFMDEDEAPKASDQ
ERKDEAGGWTEVKDTDKDELPVNENKEEMVPDDTIHEMAVGKGLSGALQLLKERGTLKEG
IEWGGRNMDKKKSKLVGIYDNTGTKEIRIERTDEFGRIMTPKEAFRMISHKFHGKGPGKM
KQEKRMKQYQEELKLKQMKNSDTPSQSVERMREAQARLKTPYLVLSGHVKPGQTSDPRSG
FATVEKDVPGSLTPMLGDRKVEHFLGIKRKAEPSNMGPPKRPKT
NT seq 2835 nt   +upstreamnt  +downstreamnt
atggacatggactggtcagaaccgaagcccgaaagaagtgatgaacttagagatcgagat
gactctccaacaagagactaccacgatggagcgtatgatgatttggaggaaactggcatt
gaaaaatcaagcaagcatcggagcaaggataggaaaaagagccgaagagaagagaaggat
catagaggtaaagaccgagaacgatccaaagctggtgatggtttgaaggagagagagaaa
gagactaaagatttggaaaaagatcgggtaacaagtagagaacgaaggaaggaagataga
gatgaacgtgagaaggataggaatagggacaaagtaagggagaaggattatgatagggag
aaatatagagataaagagcgtgaaagggataaagatcggaaagatcgaggaaaggaaaag
gagcgtgagagagagagagaggtggataaggagagcgaccgagggcgagataaagagaga
ggaaaagagaagaatagggatagggataaagaaagggaaaaagaaagggacagggcaaag
gacagagacagggaaaaggagaaggagaaaagtaaagatagagaaaaagagagggaaaat
gacaaggacagagacagggatgcaattgacaaagagaagggaaaagagagaataagggat
aaggagagggaggcagaccaagatagggataggtataaggatagagacaaagggagtcgg
aagaatcgtgacgaaggtcatgatagaagcaaggatggggggaaggatgatagattgaaa
ttagatggtggagataatagggatagggatgtaaccaagcaagggaggggctctcatcat
gatgaggatgacagtagggcaattgagcatgagaaaaatgctgagggtgcttcaggacca
cagtcttcaacagcagggctccaggaacgcattttgagaatgaaagaagaaagagtaaag
agacaatctgaaggcagttctgaggtcttggcatgggttaataggagccgcaaggttgag
gaacagaggaatgctgaaaaggagaaagccttgcagctttcaaagatttttgaggagcag
gacaatattgatcaaggagaaagtgatgatgagaagccaatccggcatagttcgcaagat
ctagcaggggttaaagttcttcacggccttgacaaagtaattgacggtggggcagttgtc
ttgacactcaaagatcaggacatacttgctaatggtgacattaatgaagatgttgatatg
cttgaaaatgtggagattggagagcagaagcgacgtgatgaggcttacaaggctgccaaa
aagaaaacagggatttatgaagataagtttaatgatgaacctggttcagaaaagaaaata
cttccacagtatgatgatcctgttacagatgaggggctagctctggatgcaagtgggcgc
ttcactggtgaagcagagaagaaactggaagagctccgtagaagactccagggtgtttcc
acaaacaaccgctttgaagatcttaattcatatgggaaaaactcctcagattactatact
catgaagaaatgctccaatttaaaaagcctaaaaagaaaaaatccttgaggaaaaaagag
aagctaaatattgatgcccttgaagcagaagcagtctctgcagggttgggtgttggggat
cttggctctaggaatgatgggaagaggcagtccatcagagaggagcaagaaaggtctgag
gctgaaatgagaaatagtgcataccagttagcatatgcaaaagcggatgaggcatctaaa
gcactccgactggatcaaactcttcctgttcaattggaggaaaatgaaaatcaagttttt
ggagaggatgatgaagagcttcaaaaatcattgcaaagagcaaggaaattagtacttcaa
aagcaagatgaggcagcaacctctggtcctcaggcaattgcacttcttgcctccactact
accagcggtcagaatgtggacaatcaaaaccccatttccggagaatcacaagaaagcaga
gttgtattcacagagatggaagaatttgtttggggtcttcagcttgaggacgaagcccat
aagcctgatggtgaagatgttttcatggatgaagatgaagcaccaaaagcttctgatcaa
gaaaggaaggatgaggctggtggttggacagaggtaaaagatactgataaagatgaactt
cctgttaatgagaacaaagaggagatggtccctgatgacactattcatgaaatggcagtt
gggaaaggattatcaggtgcacttcagctgcttaaagagcgaggaacacttaaagaaggt
attgaatggggtgggagaaacatggacaagaaaaagagcaagcttgtgggcatctatgat
aacactggaaccaaggaaatacgtattgagaggacagatgagtttgggcggattatgacc
cccaaggaagcctttcggatgatttctcataaatttcatgggaaagggcccggcaaaatg
aagcaagaaaagcgcatgaagcaataccaggaagaattgaagttgaagcaaatgaagaat
tcagacaccccatcacagtctgttgagcggatgagggaagctcaagctcggttgaagaca
ccctatcttgttcttagtgggcatgttaaaccaggccaaactagtgatcccagaagtggt
tttgctacagttgagaaggatgtccctgggagcttaacacccatgcttggcgatagaaag
gttgagcatttcttggggataaaacgcaaggctgaaccaagcaacatgggcccaccaaag
agaccaaaaacctga

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