Vitis riparia (riverbank grape): 117925008
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Entry
117925008 CDS
T07274
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117925008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117925008
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117925008
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_12
ARM_TT21
TPR_1
TPR_MalT
TPR_19
TPR_10
ARM_TT21_N
DUF627
ARM_TT21_2nd
Motif
Other DBs
NCBI-GeneID:
117925008
NCBI-ProteinID:
XP_034699679
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Position
11:complement(14405354..14433676)
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AA seq
857 aa
AA seq
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MDSRDTSLSSAATRDGASPDDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKKED
DPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKKRSEELAHASGENAEAATNLGNKVGSKG
TNTMALQFSAASSGSMVYTDEFDTSVATLNLAIVWFHLHEYGKALSVLESLYQNIEPIDE
TTALHICLLLLDVALASHDVSRCAEIINYLEKAFCVGYTASQGDNVSTAQQQASNLVVKS
SSIPSNSMVPDASNSDSVASLNSSENPLSRTLSEETLDYETMFSALDIGGQNLTRPAGLP
SLNDLSRAPADRSIPTMDLKLKLQLYKVRILLLTRNLKAAKREVKQAMNIARGRDSSMAL
LLKSELEYARGNHRKAIKLLMASSNQSEMGISSIFNNNLGCIHYQLGKHHTSTIFFSKAL
SGSSSLKKEKTPKLSSFSQDKSLLIIYNCGVQYLACGKPILAARCFQKASLVFYNSPLLW
LRIAECCLMALEKGVLESSGSPSDRSEVRIHVIGKGKWRQLVLENGISRNGHANCVEKGD
WLLGDDRQPKLSMSLARQCLLNALHLLDCSASKFAKFGLSSESTLQENESSEVVSAKNSN
HKNLAGSDSKTSNITVGLGQVNANGDAKEQKGGPSLTILQSSIAVYEDICRRENQMIKQA
TLANLAYVELELQNPLKALSTAWSLLKLPDCSRIFTFLGHVYAAEALCLLNRPKEASDHL
STYLSGGNNVELPYSEEDREQWRAEKTMDCEEVNGGSLTGKNPSLEDLQGITFLKPEEAR
GTLYANLATMSAMQGELEQASQFVKQALSIIPNSSEVILTAVYVDLVLGKTQEALAKLKQ
CSHVRFLASSSQLTCSS
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggactcgcgagatacatcgctatcatccgctgccaccagggacggcgcttctccggac
gacgacgccggcctctccgttgccgcctctctagccaaggacgctgcgctgctctttcag
tctcggaagttctccgagtgcctcgatgtcttgaatcagctcctgcagaagaaagaggat
gatcccaaggttcttcataatattgctattgcggaatactttcgggatggttgttcagat
cccaagaagttgcttgaagtcttgaataatgtgaagaagagaagcgaagaacttgctcat
gcatctggagaaaatgcggaggctgctaccaatcttggaaataaagttggatctaaagga
actaataccatggcacttcaattctctgctgcaagtagtggcagtatggtttacactgat
gaatttgacacttccgtggcaactcttaacctggctattgtctggttccatcttcatgaa
tatggaaaggcactgtcagttttggaatcactatatcaaaatattgaacccatagatgag
acaacagctcttcatatttgccttttgttgctggatgttgcgttagcatctcatgatgta
tcaagatgtgcggagataattaattatctggaaaaggctttttgtgtcggttatactgct
agtcaaggtgataatgtaagcacagcgcagcaacaagcttcaaatctagtagtaaaatcc
tcttctatccctagcaattcaatggtcccagatgcttctaattctgattcagtggccagt
ctaaactcctcagaaaatcctttatcaagaactttatcagaggagacactcgattatgaa
accatgttttcagctctggacattggtggacagaacctaaccagaccggctggtcttcca
tctttaaatgatctttctagggcccctgcagatcgatctattcctaccatggatctgaag
ctcaagttgcagctttataaggttcgaattctgctcctcactaggaacttgaaggctgcc
aagcgtgaagttaagcaggctatgaacattgcacgtgggagagattcctccatggctctc
ctcttgaaatccgagcttgaatatgctcgtggtaaccaccgtaaagcaatcaaactcttg
atggcttcaagtaatcagtcagaaatggggatttcgagcatttttaacaacaatcttggg
tgcatccattatcaacttggaaaacaccatacatcaactatatttttttccaaggcactg
agcggtagttcttctcttaagaaggaaaagactccaaaactctcatccttctcgcaggat
aaatctcttctcattatatataactgtggagtgcagtacttggcctgtgggaaaccaata
cttgctgctcgctgcttccagaaggctagtttggttttctataattcgcctctattgtgg
cttcgaattgctgaatgctgtctgatggcactagagaagggagtccttgaatccagtggg
tctccatctgatagatcggaagttagaattcatgttattggcaagggaaaatggagacaa
cttgtattagaaaatggaatttcaaggaatgggcatgcaaattgtgttgaaaagggtgat
tggttattgggtgatgataggcagcctaaactctcgatgtccctcgcccgacagtgtctc
ttaaatgccttgcacttattggactgttctgcttcaaagtttgcaaaatttgggttgtct
tcagagtcaacactacaggaaaatgaatcaagtgaggttgtatctgccaagaactcaaac
cacaagaacttagctggcagtgattccaagacatccaatataacagtgggcttaggtcag
gttaatgcaaatggggatgcaaaagaacagaagggagggcctagtcttaccatcttacaa
agctccatcgcagtatatgaagatatttgtagaagagagaatcagatgatcaagcaagcc
actcttgctaatttggcatatgtagagttggaactgcaaaatcccttgaaggccctgtca
actgcctggtctcttttgaaacttcctgattgttccagaatattcacatttttgggtcat
gtgtatgcagccgaggctctctgcttgctaaatcggccaaaggaagcttctgatcatttg
tcaacctatttgtctggaggaaacaatgttgaattgccctacagtgaagaagatcgtgaa
caatggcgagctgagaaaacaatggattgtgaggaagtaaatgggggttcattgactgga
aagaacccttctcttgaggacttacaagggattacgttccttaagccagaagaagctcgt
gggaccctttatgctaatcttgccaccatgtctgcaatgcaaggagaattggagcaagct
agccagtttgtgaagcaagcattatccataatacccaatagttctgaagtcattcttact
gcagtttacgtggatcttgtgctcgggaagacacaagaagctcttgccaagttgaaacag
tgtagtcacgttaggttccttgccagcagctcacaattgacatgttcttcttga
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