Vitis riparia (riverbank grape): 117925271
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Entry
117925271 CDS
T07274
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
vri04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117925271
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117925271
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vri01009
]
117925271
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117925271
03036 Chromosome and associated proteins [BR:
vri03036
]
117925271
Protein phosphatases and associated proteins [BR:
vri01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
117925271
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
117925271
Chromosome and associated proteins [BR:
vri03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
117925271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
WD40_MABP1-WDR62_2nd
ComGF
Motif
Other DBs
NCBI-GeneID:
117925271
NCBI-ProteinID:
XP_034700131
LinkDB
All DBs
Position
11:complement(17770226..17778099)
Genome browser
AA seq
508 aa
AA seq
DB search
MNGGEVKEVEAPAEPLEWRFSQVFGERTAGEEVQEVDIISAIEFDKTGDHLATGDRGGRV
VLFERTDKRDHGGYRRDLEMMDHPVRTHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIR
WCQTANNALFLLSTNDKTIKFWKIQEKKVKKICDMNIDPSRATGNGNPACSIVKPYVTNG
GCADRSYGYLSKDFSFPAGSFAALHFPTVVHSNETSLSARCRRIYAHAHDYHINSISNNS
DGETFISADDLRINLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPTHCNMLAYSSS
KGSIRLIDLRQSALCDGHAKLFEGMEAPNSKSFFTEIIASISDIKFGKDGRYILSRDYMN
LKLWDINMDSGPVATFQVHEYLRPKLCDLYENDSIFDKFECCLSGDGTRVATGSYSNLFR
VFGCTAGSTEATTLEASKNPMRRQAPAPSRPRSLSTFARVGRRGPESPAVDANGNAFDLS
TKLLHLAWHPTENSLACAAANSLYMYFA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggggtgaagtcaaggaagtggaggcaccggcggagccgctggagtggaggttc
tctcaggtgttcggggagcggacggcgggggaggaagttcaggaagttgacatcatttct
gctattgagtttgacaaaactggagaccatcttgcgactggtgatcgtgggggacgggtg
gttttatttgaaaggaccgacaagagggatcatggtggctataggagagatcttgagatg
atggatcatcctgttagaacacatcctgagttccggtataaaacagagtttcaaagtcat
gaacctgagtttgattatctcaagagtttggaaatagaggagaaaatcaataagattaga
tggtgtcaaacagctaacaatgcattgtttcttctctccaccaatgacaaaaccatcaag
ttttggaagatccaggaaaagaaggtcaagaaaatttgcgacatgaatatagacccttca
agagctacaggaaatggcaatcctgcttgttcaattgtcaaaccatatgttacaaatgga
ggatgtgcagacagatcttacggttatttgagcaaggacttctcctttccagcagggagt
ttcgctgcactccattttcccacggtagtacacagcaatgaaacaagcctatcagctaga
tgtcgaagaatatatgctcatgctcatgactatcatatcaattccatttcaaacaacagt
gatggagagacatttatatcagctgatgatctacgcataaacctttggaacctggaaatt
agcaatcaaagtttcaatattgttgatgtgaagcctactaacatggaggatctgactgaa
gtgataacatccgctgaattccaccctacacactgtaatatgttggcatacagtagctca
aagggctcaatccgtcttattgatttgcgacaatcggctctctgtgacggtcatgccaaa
ttgtttgagggaatggaggcacctaattcaaaatcttttttcacagagataattgcttca
atttcagacattaagtttggaaaggacggaagatacatacttagtcgcgattacatgaat
ctgaagctttgggacatcaatatggattcaggtcctgttgcaactttccaagttcatgaa
tatttgaggcccaagttgtgcgatttgtatgaaaatgattcaatctttgacaaatttgag
tgttgtctgagtggagatggaactcgagttgcaactggttcatacagcaatctcttccgc
gtttttggctgtactgcaggaagcactgaggctacaactttggaagccagcaaaaacccc
atgaggagacaagcacctgccccttcaaggccgagatctttgagcactttcgcacgcgtt
ggccgacgaggaccagaaagccctgcggtcgatgcaaatggaaatgcatttgacttgtcc
acaaagttgctccacttagcttggcacccaactgagaattccctcgcctgtgccgctgca
aacagcctgtacatgtattttgcgtaa
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