Vitis riparia (riverbank grape): 117925714
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Entry
117925714 CDS
T07274
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03030
DNA replication
vri03420
Nucleotide excision repair
vri03430
Mismatch repair
vri03440
Homologous recombination
vri03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117925714
03420 Nucleotide excision repair
117925714
03430 Mismatch repair
117925714
03440 Homologous recombination
117925714
03460 Fanconi anemia pathway
117925714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vri03000
]
117925714
03032 DNA replication proteins [BR:
vri03032
]
117925714
03400 DNA repair and recombination proteins [BR:
vri03400
]
117925714
Transcription factors [BR:
vri03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117925714
DNA replication proteins [BR:
vri03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117925714
DNA repair and recombination proteins [BR:
vri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117925714
MMR (mismatch excision repair)
117925714
DSBR (double strand breaks repair)
HR (homologous recombination)
117925714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-like
DUF223
Motif
Other DBs
NCBI-GeneID:
117925714
NCBI-ProteinID:
XP_034700693
LinkDB
All DBs
Position
11:complement(18689352..18691987)
Genome browser
AA seq
622 aa
AA seq
DB search
MPVNLTPNAIAAINGGDVNSKPLVQVLDIKLIGNSQERYRFLLSDAVATQQAMLATQLND
RVKSGQVRKGSVIQLIDYICSVVQNRKIIVVLNMETIIPECEIIGNPKMNTESHSTAQKE
FPGGNPARSVGVTNNNLSVQNGGNKMPSFRPSVQPPFQPPPNYKSHGTILKNEAPARIIP
IAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRF
YDTIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLEASSSVELCPDEDGSIPKQQFSFRP
ISEIENVENNSILDVIGIVISVNPSVPILRKNGMETQRRIVNLKDGSGRSVELTMWGEFC
NREGHQLQEMIDSGSFPVLAVKSGKVNDFSGKSVGTISATQLFINPDFTEACNLREWFDR
GGKNAASQSISRDIMPAGSRNEIRKTVSQIKDEGLGRSDKPDWVTVKATISFIKTDTFCY
AACPLMIGDRQCNKKVTRSGNTRWQCDRCNQEFEDCDYRYLLQAQVQDHTGLTWVTAFQE
AGEEILGCSAKELYLLKYEEEDDFRFGEIIRSRLLNQFLFRLKIKEEMYGEEQKVKITVV
KADKVNHTSESRHLLDLISKCP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaatctgacgccgaacgcgattgcggcaatcaacggtggagatgtgaattca
aagccgcttgtgcaggttctggacatcaagctcattggaaactcacaggagcggtaccga
tttctgctttccgatgccgtggcgactcagcaggccatgctggcgactcaactcaatgac
cgagtcaagagcggacaagttcgcaaaggatctgtaattcagttgattgattatatctgc
agcgttgttcaaaatcgcaagattattgttgtgttgaacatggaaactataataccagaa
tgtgaaataattggaaacccgaaaatgaatactgaatctcattcaacagctcagaaagag
tttcccggtggcaatcctgcaagatcagtgggtgttactaataataatttgagtgtccaa
aatggtggtaataagatgccgagttttcgaccttctgttcaacctcctttccaaccgcct
ccaaattacaaaagtcatggcacaattttgaagaatgaggcaccagcacggataattccg
attgctgctttgaatccttatcaggggcggtgggctatcaaggcaagggtaactgctaaa
ggtgatttgcggagatacaacaatgccaggggagatgggaaggttttctcatttgacctc
cttgattctgatggaggggagattcgagtgacctgctttaatgcagttgttgatcggttt
tatgatactattgaggttgggaaagtttacttgatatcgaagggtagcttaaaacctgca
cagaagaacttcaaccacctgaagaatgaatgggaaatatttttggaagcaagctcaagt
gtggagctgtgcccagatgaggatggctcaattccaaaacagcagttctcctttagacca
atcagtgaaattgagaatgttgaaaacaattccatacttgatgttattggcattgtaata
tcagtgaatccttcagtccccatcttgagaaagaatggtatggaaactcagcgaagaatt
gtaaatctaaaggatggctctggtcggagtgttgagctcaccatgtggggggaattctgc
aacagggaaggtcatcagctgcaggagatgattgattctgggtctttcccagttttggct
gtgaaatccggaaaggttaacgacttcagtgggaaatctgtaggcacgatctctgccaca
cagctcttcataaatccagactttacagaggcttgtaacttgagagagtggtttgatcgt
gggggaaagaatgctgcttctcagtccatctctagagatatcatgcctgcaggatctagg
aatgagatacgtaaaactgtgtctcagatcaaggatgaaggtcttggaagatcagataaa
ccagactgggtcacggtgaaggcaaccatatcattcattaaaacagacactttctgttat
gcagcttgcccattgatgattggagatagacagtgtaataagaaagtgacaaggtcaggg
aacacaagatggcaatgtgataggtgcaatcaagaatttgaggactgtgattatcgatat
cttcttcaagctcaagtacaagaccatacaggattgacttgggtgacagctttccaggaa
gccggtgaagagatcttgggctgctcagcaaaagagctgtacttgttgaaatacgaggag
gaggatgatttcaggtttggagaaataatccggagcagactccttaaccaatttttgttc
agacttaagatcaaagaggaaatgtatggtgaagaacagaaggtgaagatcactgttgtc
aaagcagacaaggtgaaccatacttctgaaagtagacatctgcttgatctgatctcaaag
tgcccttaa
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