Vitis riparia (riverbank grape): 117926048
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Entry
117926048 CDS
T07274
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117926048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vri03019
]
117926048
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117926048
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
117926048
NCBI-ProteinID:
XP_034701025
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Position
12:complement(17705727..17711908)
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AA seq
323 aa
AA seq
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MSNFSFSDWSHFLDQWGASSSSSSSNANHMPEKFTPTATSVEKLIKDIENPLTREHALFL
LSRNRGIRADLAPLLWNSSGTIYLLLQEITSAYRILSSPELVARASNNVCNALALIQCVA
SNPDTRMNLIQANIPCYLYPFLGVKNKEKPYEYLRLTSLGVIGALVKVDNAEIVHFLLQS
EIVPLCLRCMEVGNELSKTVATFIIQKILVQDEGLRYFCSFAERFFALARVMGTMVDNLV
EEPSQRLLKHIIHCYVRLSDCPRACDGFKICLPIRLRDAAILNLVRDDPIALEWLRQLFF
NIATGNRVSSSAIGETLGSLLAS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatttttctttctccgattggagtcattttctagatcaatggggagcgagttct
agttccagttcttccaatgccaaccacatgcccgaaaaattcacccccactgctacttct
gtggagaagttgatcaaggatattgagaacccactgactcgagaacatgctctatttctt
ctatcaaggaatcgaggaatacgtgcagatttagcaccattgttatggaactctagtggt
accatatatttactcttacaggaaataacatcggcataccgtatcctatcatcccctgaa
cttgtagcaagagcatctaacaatgtatgcaatgcacttgctctaattcagtgtgtcgct
tctaacccagatacgaggatgaatctcattcaagctaacataccatgttacttataccca
ttcctcggagtcaagaacaaagaaaaaccttatgaatatttgaggcttaccagcttgggt
gttattggtgcccttgtgaaggttgataatgcagaaattgttcactttcttctccaatca
gagatagttcctttatgcctacgttgtatggaagtgggcaatgaactatcaaaaacagtt
gctacttttataattcagaaaattctggtgcaagatgaggggttgaggtacttttgctcc
tttgcagaacgctttttcgcattagcccgtgttatgggaaccatggttgacaaccttgtc
gaagaaccttcacaaaggctactaaaacacataattcattgttatgttaggttgtctgac
tgtccaagagcttgtgatgggtttaaaatttgtcttcctataaggttgagggatgctgct
atccttaaccttgttcgagatgacccaattgcacttgagtggctaagacaattgtttttc
aatattgcaactggaaatcgtgtttcatcatcagccattggagaaacacttgggagcttg
cttgcaagctag
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