Vitis riparia (riverbank grape): 117926485
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Entry
117926485 CDS
T07274
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
vri
Vitis riparia (riverbank grape)
Pathway
vri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117926485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vri03021
]
117926485
03019 Messenger RNA biogenesis [BR:
vri03019
]
117926485
Transcription machinery [BR:
vri03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117926485
Messenger RNA biogenesis [BR:
vri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117926485
U7-dependent histone pre-mRNA processing factors
117926485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
117926485
NCBI-ProteinID:
XP_034701472
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All DBs
Position
12:4054836..4061432
Genome browser
AA seq
694 aa
AA seq
DB search
MASTGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS
DYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINS
MNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDK
KNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKE
LMPPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLA
EKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRITIPYTGAFGVIKHRLK
QIYESVESLPDEESEVPAFRVHERVTVKHESEKHISLHWTSDPISDMVSDSIVALVLNIS
REIPKVVVESEAIKTEEENGKKAEKVIHALLVSLFGDVKLGENGNLVISVDGNVAHLDKQ
SGNVESENEGLKERVRVAFQRIQNAVKPIPLSVS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttctacagggccaccacagtctttgaagagaccagattcctcattaacaagagaa
ggagaccagctgattattacccctctaggtgctggaaatgaagtgggccgttcctgtgtc
tacatgtcctataaagggaaaaccatattgtttgactgtggaattcatcctgcatactcg
ggcatggctgctttgccatactttgatgagattgatccttcgaccattgatgtccttttg
gtgacacactttcacttggatcatgctgcatcccttccatatttcctggagaagaccaca
ttcaaagggcgagtttttatgactcatgcaaccaaggctatctacaagttgcttttgtct
gattatgtaaaagtgagcaaagtttcagttgaagatatgttgtatgatgaacaagacatt
cttcgctccatggataaaattgaggttattgatttccatcagactttagaagtaaatggt
atacgattttggtgttacacagctggccacgtccttggtgctgccatgtttatggttgat
attgctggtgtccgagtactttacactggagactattctcgtgaagaagatcgtcatctc
cgtgctgctgagatcccacagttctcccctgatatttgcataattgaatccacttatggt
gtccaactccatcagcctcggcatgtgcgagaaaagcgcttcacagatgtcatccactca
accatttctcaagggggccgtgttctaatccctgcatttgctctaggtcgtgcccaagaa
ctcctccttatccttgatgagtattggtctaaccatcctgagctccataacatccccata
tattatgcttccccccttgcaaaaaggtgcatggctgtttaccagacatacatcaactcc
atgaatgagaggatccgcaaccaatttgcaaattcgaatccttttgatttcaagcacata
tcacctttaaagagcattgagaattttaatgatgtaggtccatcagtggtgatggcgagt
ccgagtggccttcagagtgggttgtcaagacaactgtttgatatgtggtgctctgataag
aaaaatgcatgtgttatacctgggtatgtcgtggaagggacattggcaaaaaccatcatc
aatgaacccaaggaagttactctaatgaatggtcttactgctcccctcaacatgcaggtc
cattacatttctttctctgctcatgcagattttgcacagacaagtacattcttgaaggag
ctcatgccacctaacatcattcttgtccatggagaagctaatgagatggggaggctcaaa
cagaagcttatcacccagtttgctgaccgcaacaccaaaattatttccccaaagaactgt
cagtcagttgaaatgtatttcaactctgagaaaatggcaaaaaccattgggaggctggct
gaaaagaccccaggagttggtgaaaccgtcagtggtttactggtaaagaaaggtttcact
tatcagataatggcacctgatgatctccatgtcttctcgcagctatccacggcaaatgtc
actcagaggattactattccttacactggtgcctttggtgtaataaagcacaggctgaag
cagatatatgagagtgtggagtcattgccagatgaagaatctgaggttccagcttttcga
gtccatgaacgggtgacagtgaagcatgagtcggagaagcatatttcactgcattggaca
tcagatcctattagtgacatggtctctgattccattgtggctctggttttaaatatcagt
cgtgagatccccaaggtagtagttgaatcagaggccataaaaactgaagaagaaaacggg
aagaaagcagaaaaggttatccatgcactccttgtttctctgtttggagatgtgaagttg
ggagagaatgggaacctggtgataagcgttgatggaaatgtggcacatcttgataaacag
agtgggaatgttgagagtgaaaacgaaggccttaaggaaagggtgagagtagcattccag
cggatccaaaatgctgtgaagccaatccctctatctgtgtcttag
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